Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 8.8e-309 1062.8 528 100.0
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 2.1e-193 679.5 519 64.4
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 3.0e-184 649.0 529 59.9
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.1e-181 640.6 532 61.1
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 2.4e-181 639.4 528 57.6
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.7e-177 625.9 534 61.6
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 6.8e-176 621.3 537 57.5
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 3.7e-174 615.5 531 56.1
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.6e-169 600.1 530 56.2
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 2.1e-169 599.7 530 56.2
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.1e-169 599.7 530 56.4
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.8e-168 596.7 528 54.4
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 8.9e-168 594.3 532 55.6
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.7e-163 580.1 534 54.5
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 2.5e-162 576.2 528 54.4
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.6e-161 572.4 534 54.1
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 8.3e-158 561.2 534 53.7
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.2e-157 559.3 534 53.9
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 1.5e-154 550.4 526 53.2
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 6.2e-153 545.0 530 53.8
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 6.2e-153 545.0 529 51.8
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 8.9e-152 541.2 538 50.9
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 2.0e-151 540.0 533 53.1
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 3.4e-151 539.3 526 52.9
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 3.4e-151 539.3 533 51.8
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 2.9e-150 536.2 528 52.1
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 3.7e-150 535.8 531 52.2
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.1e-149 534.3 536 51.1
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.1e-148 530.0 539 51.6
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 7.8e-148 528.1 537 51.0
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 7.8e-148 528.1 535 50.3
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.3e-147 526.6 538 51.7
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.1e-146 524.2 540 49.1
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 2.5e-146 523.1 532 49.8
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 3.3e-146 522.7 532 49.8
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 4.3e-146 522.3 534 51.1
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.6e-145 520.4 545 50.6
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 8.9e-144 514.6 537 49.2
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.2e-143 514.2 530 51.9
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 7.5e-143 511.5 531 50.5
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 6.4e-142 508.4 528 49.8
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.4e-141 507.3 528 49.8
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.4e-141 506.5 539 49.5
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.1e-140 503.4 520 49.8
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 4.6e-140 502.3 518 49.8
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 2.3e-139 500.0 519 49.7
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 3.9e-139 499.2 533 50.1
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 8.6e-139 498.0 529 49.1
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.5e-138 497.3 528 49.2
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 2.5e-138 496.5 523 49.3
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.2e-137 494.2 536 49.4
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.1e-137 493.4 529 47.1
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.8e-136 490.3 529 48.6
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.1e-136 489.6 526 46.6
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 4.0e-136 489.2 537 48.4
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.2e-135 487.6 532 45.9
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 4.4e-135 485.7 525 49.7
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.9e-135 484.6 519 48.2
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 1.3e-134 484.2 521 48.9
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-134 484.2 521 48.9
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.3e-134 484.2 528 48.5
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.3e-134 484.2 539 46.4
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.1e-133 478.4 516 48.1
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.2e-132 477.6 535 49.2
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-132 477.2 516 47.9
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 3.5e-132 476.1 538 45.5
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 1.7e-131 473.8 449 53.0
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 5.1e-131 472.2 530 45.7
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.9e-130 470.3 530 48.7
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.5e-130 469.9 536 45.9
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.2e-127 461.1 517 46.6
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 4.4e-127 459.1 515 46.8
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 4.4e-127 459.1 534 47.4
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 2.9e-126 456.4 541 44.0
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 8.4e-126 454.9 528 47.5
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 7.1e-125 451.8 525 46.1
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 7.1e-125 451.8 525 46.3
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 3.5e-124 449.5 524 45.6
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.7e-123 447.2 541 44.9
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 4.3e-122 442.6 530 45.7
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.1e-120 438.0 523 45.3
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.8e-120 437.2 546 44.7
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.2e-119 434.5 512 46.3
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.0e-119 433.7 539 43.6
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 2.6e-119 433.3 524 44.8
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 9.9e-119 431.4 446 51.3
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.3e-118 431.0 524 44.8
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.6e-116 424.1 588 41.7
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 3.5e-116 422.9 527 43.8
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 9.6e-114 414.8 428 51.9
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 2.4e-112 410.2 523 42.8
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 3.1e-112 409.8 505 46.5
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 9.0e-112 408.3 522 43.1
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.5e-111 407.5 522 43.7
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.5e-111 407.5 522 43.7
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.5e-111 407.5 522 43.7
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 8.4e-110 401.7 522 42.7
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.9e-106 390.6 550 40.5
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 3.3e-106 389.8 529 41.8
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 3.3e-106 389.8 418 49.5
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.8e-104 384.0 521 42.2
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 3.1e-104 383.3 540 42.4
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 6.5e-102 375.6 486 45.3
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.9e-93 347.4 329 55.3
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 5.7e-82 309.3 294 51.4
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.2e-79 301.6 614 32.7
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 5.9e-79 299.3 277 51.3
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.9e-78 297.0 537 35.9
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.8e-78 296.6 585 34.5
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.3e-74 283.5 283 51.9
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.7e-70 271.2 228 54.8
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 2.5e-69 267.3 320 46.2
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 3.0e-67 260.4 404 39.4
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 8.8e-67 258.8 374 42.0
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 5.5e-61 239.6 565 32.6
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 2.7e-60 237.3 551 30.5
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 8.9e-51 205.7 443 32.3
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 1.3e-41 175.3 546 26.0
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.7e-41 174.9 193 45.1
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-40 171.4 419 30.8
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 9.2e-40 169.1 290 36.2
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.0e-38 165.6 296 32.1
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 9.2e-24 115.9 289 30.4
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.2e-23 115.5 124 48.4
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.2e-23 115.5 178 37.1
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 9.6e-21 105.9 116 44.8
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 2.8e-20 104.4 245 33.1
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 4.7e-20 103.6 109 46.8
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.4e-19 102.1 101 50.5
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.0e-18 98.2 95 44.2
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 6.0e-15 86.7 192 31.8
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 7.8e-15 86.3 69 63.8
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 5.1e-14 83.6 122 36.9
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.3e-13 80.9 181 29.3
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 7.3e-13 79.7 155 32.9
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.6e-13 79.3 181 28.7
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-11 73.6 81 42.0
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-10 72.4 89 38.2
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.1e-08 63.2 59 44.1
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 7.1e-08 63.2 62 41.9
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.3e-08 62.8 103 33.0
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 4.6e-07 60.5 200 22.5
BraA03t11551Z Brassica rapa HOM05D001573 ORTHO05D001660 6.0e-07 60.1 297 23.2
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.0e-06 59.3 65 40.0
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 6.6e-06 56.6 51 51.0
A03p23330 Brassica napus HOM05D001573 ORTHO05D001660 8.7e-06 56.2 308 23.1


User provided reference genes

Program Settings