Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08777 Striga asiatica HOM05D002303 ORTHO05D403914 7.5e-106 387.1 184 100.0
SGA_v2.0_scaffold185G40083 Striga asiatica HOM05D002303 ORTHO05D012836 5.9e-18 95.1 72 70.8
QL04p079730 Quercus lobata HOM05D002303 ORTHO05D006504 2.1e-15 86.7 93 52.7
CARHR005840 Cardamine hirsuta HOM05D002303 ORTHO05D006504 2.7e-15 86.3 83 56.6
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 4.7e-15 85.5 94 52.1
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 4.7e-15 85.5 94 52.1
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 4.7e-15 85.5 94 52.1
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 4.7e-15 85.5 94 52.1
Thhalv10007215m.g Eutrema salsugineum HOM05D002303 ORTHO05D006504 4.7e-15 85.5 94 52.1
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 4.7e-15 85.5 94 52.1
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 4.7e-15 85.5 94 52.1
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 4.7e-15 85.5 94 52.1
unitig_26.g10342 Utricularia gibba HOM05D002303 ORTHO05D006504 6.1e-15 85.1 94 52.1
Aa31LG1G4340 Aethionema arabicum HOM05D002303 ORTHO05D006504 7.9e-15 84.7 94 52.1
EL10Ac6g13671 Beta vulgaris HOM05D002303 ORTHO05D006504 1.0e-14 84.3 94 51.1
Migut.L01412 Erythranthe guttata HOM05D002303 ORTHO05D006504 1.0e-14 84.3 94 52.1
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 1.4e-14 84.0 94 51.1
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 1.4e-14 84.0 94 51.1
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 1.4e-14 84.0 94 51.1
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 1.4e-14 84.0 94 51.1
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 1.4e-14 84.0 94 51.1
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 1.4e-14 84.0 94 51.1
CiPaw.06G072200 Carya illinoinensis HOM05D002303 ORTHO05D006504 1.4e-14 84.0 94 51.1
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 1.4e-14 84.0 94 52.1
AUR62005376 Chenopodium quinoa HOM05D002303 ORTHO05D006504 2.3e-14 83.2 94 50.0
AUR62014039 Chenopodium quinoa HOM05D002303 ORTHO05D006504 2.3e-14 83.2 94 50.0
Ca_09780_v3 Cicer arietinum L. HOM05D002303 ORTHO05D006504 2.3e-14 83.2 94 51.1
Oeu044822.1 Olea europaea HOM05D002303 ORTHO05D006504 2.3e-14 83.2 94 51.1
Oeu044823.1 Olea europaea HOM05D002303 ORTHO05D006504 2.3e-14 83.2 94 51.1
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 3.0e-14 82.8 94 50.0
Nn4g22801 Nelumbo nucifera HOM05D002303 ORTHO05D006504 3.0e-14 82.8 94 50.0
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 3.0e-14 82.8 94 50.0
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 3.0e-14 82.8 94 50.0
TWI36G0505 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 3.0e-14 82.8 94 50.0
TAR374G1747 Trochodendron aralioides HOM05D002303 ORTHO05D006504 3.0e-14 82.8 94 50.0
TAR622G0752 Trochodendron aralioides HOM05D002303 ORTHO05D006504 3.0e-14 82.8 94 50.0
TAR680G0002 Trochodendron aralioides HOM05D002303 ORTHO05D006504 3.0e-14 82.8 94 50.0
Ah.03g132680 Amaranthus hybridus HOM05D002303 ORTHO05D006504 3.9e-14 82.4 94 50.0
Ciclev10031042m.g Citrus clementina HOM05D002303 ORTHO05D006504 3.9e-14 82.4 94 50.0
ECA246G1022 Erigeron canadensis HOM05D002303 ORTHO05D006504 3.9e-14 82.4 94 48.9
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 3.9e-14 82.4 94 48.9
FvH4_4g34510 Fragaria vesca HOM05D002303 ORTHO05D006504 5.1e-14 82.0 94 50.0
FAN07G1287 Fragaria x ananassa HOM05D002303 ORTHO05D006504 5.1e-14 82.0 94 50.0
FAN12G1541 Fragaria x ananassa HOM05D002303 ORTHO05D006504 5.1e-14 82.0 94 50.0
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 5.1e-14 82.0 94 50.0
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 5.1e-14 82.0 94 50.0
Prupe.1G254100 Prunus persica HOM05D002303 ORTHO05D006504 5.1e-14 82.0 94 50.0
QL07p042264 Quercus lobata HOM05D002303 ORTHO05D006504 5.1e-14 82.0 94 51.1
RcHm_v2.0_Chr4g0443891 Rosa chinensis HOM05D002303 ORTHO05D006504 5.1e-14 82.0 94 50.0
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 6.7e-14 81.6 94 48.9
Sabra10G0042400 Salix brachista HOM05D002303 ORTHO05D006504 6.7e-14 81.6 94 50.0
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 6.7e-14 81.6 94 50.0
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 6.7e-14 81.6 94 50.0
Aqoxy3G02980 Aquilegia oxysepala HOM05D002303 ORTHO05D006504 8.8e-14 81.3 94 48.9
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 8.8e-14 81.3 94 50.0
MBI04_g22061_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 8.8e-14 81.3 94 48.9
Hund05993 Selenicereus undatus HOM05D002303 ORTHO05D006504 8.8e-14 81.3 94 50.0
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 1.1e-13 80.9 94 50.0
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 1.1e-13 80.9 94 48.9
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 1.1e-13 80.9 94 50.0
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 1.1e-13 80.9 94 48.9
PSO063G5744 Papaver somniferum HOM05D002303 ORTHO05D006504 2.0e-13 80.1 94 47.9
PSO832G3043 Papaver somniferum HOM05D002303 ORTHO05D006504 2.0e-13 80.1 94 47.9
Lsat_1_v5_gn_9_45861 Lactuca sativa HOM05D002303 ORTHO05D006504 2.6e-13 79.7 94 48.9
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 3.3e-13 79.3 94 47.9
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 4.4e-13 79.0 94 48.9
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 4.4e-13 79.0 94 48.9
Os03g0397500 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D006504 4.4e-13 79.0 94 50.0
Zm00001eb019350 Zea mays HOM05D002303 ORTHO05D006504 5.7e-13 78.6 94 48.9
Zm00001eb392750 Zea mays HOM05D002303 ORTHO05D006504 5.7e-13 78.6 94 48.9
MBI03_g10297_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 7.4e-13 78.2 94 47.9
PSO782G3482 Papaver somniferum HOM05D002303 ORTHO05D006504 7.4e-13 78.2 94 46.8
HPP92_008340 Vanilla planifolia HOM05D002303 ORTHO05D006504 7.4e-13 78.2 94 46.8
PGSC0003DMG402030529 Solanum tuberosum HOM05D002303 ORTHO05D006504 1.3e-12 77.4 44 84.1
RcHm_v2.0_Chr5g0051741 Rosa chinensis HOM05D002303 ORTHO05D006504 2.2e-12 76.6 95 46.3
Mapoly0001s0085 Marchantia polymorpha HOM05D002303 ORTHO05D006504 2.8e-12 76.3 94 46.8
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 4.8e-12 75.5 94 47.9
ATR0810G235 Amborella trichopoda HOM05D002303 ORTHO05D006504 4.8e-12 75.5 94 47.9
AagrBONN_evm.TU.Sc2ySwM_228.161 Anthoceros agrestis HOM05D002303 ORTHO05D006504 4.8e-12 75.5 94 47.9
CBR_g42136 Chara braunii HOM05D002303 ORTHO05D006504 1.8e-11 73.6 94 45.7
CSS0030675 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 9.1e-11 71.2 81 53.1
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 9.1e-11 71.2 94 47.9
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 9.1e-11 71.2 94 47.9
CDE10G0655 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 2.0e-10 70.1 94 47.9
Sp4g02400 Schrenkiella parvula HOM05D002303 ORTHO05D006504 2.6e-10 69.7 44 77.3
PSO302G0183 Papaver somniferum HOM05D002303 ORTHO05D006504 5.9e-10 68.6 93 41.9
Sed0003805 Sechium edule HOM05D002303 ORTHO05D006504 1.0e-09 67.8 81 51.9
SGA_v2.0_scaffold20G09013 Striga asiatica HOM05D001336 ORTHO05D001211 1.7e-09 67.0 73 53.4
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 3.8e-09 65.9 94 38.3
CSS0020077 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 6.5e-09 65.1 94 45.7
SGA_v2.0_scaffold8G04222 Striga asiatica HOM05D002303 ORTHO05D006504 8.5e-09 64.7 94 46.8
CDE10G0556 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 1.1e-08 64.3 38 81.6
COL.COLO4_06925 Corchorus olitorius HOM05D002303 ORTHO05D006504 1.5e-08 63.9 94 45.7
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 1.5e-08 63.9 94 45.7
Cpa.g.sc292.8 Carica papaya HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
Dinv24860 Davidia involucrata HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
Duzib168G1309 Durio zibethinus HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
Gohir.A05G001900 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
HanXRQChr15g0490111 Helianthus annuus HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
Lsat_1_v5_gn_9_45920 Lactuca sativa HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
Manes.12G029100 Manihot esculenta HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
QL03p061244 Quercus lobata HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
Sc04g0009110 Simmondsia chinensis HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
THA.LOC104823641 Tarenaya hassleriana HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
Thecc.09G187500 Theobroma cacao HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
GSVIVG01020240001 Vitis vinifera HOM05D002303 ORTHO05D006504 1.9e-08 63.5 94 44.7
Gohir.D05G002200 Gossypium hirsutum HOM05D002303 ORTHO05D006504 2.5e-08 63.2 94 43.6
Gorai.009G002100 Gossypium raimondii HOM05D002303 ORTHO05D006504 2.5e-08 63.2 94 43.6
Actinidia13510 Actinidia chinensis HOM05D002303 ORTHO05D006504 3.2e-08 62.8 94 44.7
CSS0022544 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 3.2e-08 62.8 94 44.7
Glyma.10G192200 Glycine max HOM05D002303 ORTHO05D006504 3.2e-08 62.8 94 44.7
Glyma.20G198200 Glycine max HOM05D002303 ORTHO05D006504 3.2e-08 62.8 94 44.7
Phvul.007G134200 Phaseolus vulgaris HOM05D002303 ORTHO05D006504 3.2e-08 62.8 94 44.7
Rhsim07G0188400 Rhododendron simsii HOM05D002303 ORTHO05D006504 3.2e-08 62.8 94 44.7
VMungo0720G0741 Vigna mungo HOM05D002303 ORTHO05D006504 3.2e-08 62.8 94 44.7
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 4.2e-08 62.4 94 45.7
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 4.2e-08 62.4 94 45.7
MSTRG.7897 Avicennia marina HOM05D002303 ORTHO05D006504 4.2e-08 62.4 94 45.7
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 4.2e-08 62.4 94 45.7
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 4.2e-08 62.4 94 45.7
SalBow2G0957 Salvia bowleyana HOM05D002303 ORTHO05D006504 4.2e-08 62.4 94 45.7
SGA_v2.0_scaffold165G38248 Striga asiatica HOM05D002303 ORTHO05D006504 4.2e-08 62.4 94 45.7
Potri.010G064600 Populus trichocarpa HOM05D002303 ORTHO05D006504 5.5e-08 62.0 94 43.6
CANSAT64G0961 Cannabis sativa HOM05D002303 ORTHO05D006504 7.2e-08 61.6 94 43.6
Sabra08G0132000 Salix brachista HOM05D002303 ORTHO05D006504 7.2e-08 61.6 94 43.6
Actinidia15045 Actinidia chinensis HOM05D002303 ORTHO05D006504 9.4e-08 61.2 93 44.1
Hma1.2p1_0867F.1_g230190 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 9.4e-08 61.2 94 44.7
Hma1.2p1_0867F.1_g230200 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 9.4e-08 61.2 94 44.7
ClCG05G025310 Citrullus lanatus HOM05D002303 ORTHO05D006504 1.2e-07 60.8 94 43.6
MELO3C011999.2 Cucumis melo HOM05D002303 ORTHO05D006504 1.2e-07 60.8 94 43.6
CsaV3_5G031590 Cucumis sativus L. HOM05D002303 ORTHO05D006504 1.2e-07 60.8 94 43.6
Sed0001575 Sechium edule HOM05D002303 ORTHO05D006504 1.2e-07 60.8 94 43.6
CSS0001865 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.6e-07 60.5 94 43.6
Lj5g0024759 Lotus japonicus HOM05D002303 ORTHO05D006504 2.1e-07 60.1 94 43.6
Medtr1g072740 Medicago truncatula HOM05D002303 ORTHO05D006504 2.1e-07 60.1 94 43.6
Medtr4g102520 Medicago truncatula HOM05D002303 ORTHO05D006504 2.1e-07 60.1 94 43.6
Psat6g141280 Pisum sativum HOM05D002303 ORTHO05D006504 2.1e-07 60.1 94 43.6
TPR.G18556 Trifolium pratense HOM05D002303 ORTHO05D006504 2.1e-07 60.1 94 43.6
vmacro16253 Vaccinium macrocarpon HOM05D002303 ORTHO05D006504 2.1e-07 60.1 94 43.6
Lalb_Chr02g0150771 Lupinus albus HOM05D002303 ORTHO05D006504 2.7e-07 59.7 94 43.6
Pp3c5_27650 Physcomitrium patens HOM05D002303 ORTHO05D006504 2.7e-07 59.7 94 43.6
BcaC07g38610 Brassica carinata HOM05D002303 ORTHO05D000950 3.6e-07 59.3 85 43.5
SEGI_38390 Sequoiadendron giganteum HOM05D002303 ORTHO05D023498 6.1e-07 58.5 58 53.4


User provided reference genes

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