Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08686 Striga asiatica HOM05D000032 ORTHO05D399079 1.1e-122 443.4 220 100.0
SGA_v2.0_scaffold25G11147 Striga asiatica HOM05D000032 ORTHO05D007039 4.4e-12 75.9 55 67.3
PGR042G3397 Punica granatum HOM05D000032 ORTHO05D007039 8.3e-11 71.6 49 71.4
unitig_52.g17544 Utricularia gibba HOM05D000032 ORTHO05D007039 1.1e-10 71.2 50 70.0
Cfa015213 Carpinus fangiana HOM05D000032 ORTHO05D007039 1.4e-10 70.9 49 71.4
Haze_01423 Corylus avellana HOM05D000032 ORTHO05D007039 1.4e-10 70.9 49 71.4
Eucgr.F02760 Eucalyptus grandis HOM05D000032 ORTHO05D007039 5.4e-10 68.9 70 52.9
Nn2g15381 Nelumbo nucifera HOM05D000032 ORTHO05D007039 7.0e-10 68.6 49 67.3
SalBow6G7032 Salvia bowleyana HOM05D000032 ORTHO05D007039 7.0e-10 68.6 55 61.8
Dinv25780 Davidia involucrata HOM05D000032 ORTHO05D007039 1.6e-09 67.4 49 65.3
ClCG10G008660 Citrullus lanatus HOM05D000032 ORTHO05D007039 2.0e-09 67.0 49 65.3
MELO3C017528.2 Cucumis melo HOM05D000032 ORTHO05D007039 2.0e-09 67.0 49 65.3
Sc15g0007470 Simmondsia chinensis HOM05D000032 ORTHO05D007039 2.0e-09 67.0 49 67.3
Duzib041G0456 Durio zibethinus HOM05D000032 ORTHO05D007039 2.7e-09 66.6 49 63.3
Oeu045989.1 Olea europaea HOM05D000032 ORTHO05D007039 2.7e-09 66.6 55 58.2
QL09p029474 Quercus lobata HOM05D000032 ORTHO05D007039 3.5e-09 66.2 49 63.3
Sed0020079 Sechium edule HOM05D000032 ORTHO05D007039 3.5e-09 66.2 49 65.3
HPP92_015492 Vanilla planifolia HOM05D000032 ORTHO05D007039 3.5e-09 66.2 49 63.3
Migut.N03249 Erythranthe guttata HOM05D000032 ORTHO05D007039 4.6e-09 65.9 52 59.6
TAR381G1525 Trochodendron aralioides HOM05D000032 ORTHO05D007039 4.6e-09 65.9 49 63.3
Solyc10g009070.3 Solanum lycopersicum HOM05D000032 ORTHO05D007039 6.0e-09 65.5 49 61.2
Sopen10g004850 Solanum pennellii HOM05D000032 ORTHO05D007039 6.0e-09 65.5 49 61.2
THA.LOC104812064 Tarenaya hassleriana HOM05D000032 ORTHO05D007039 6.0e-09 65.5 49 63.3
COL.COLO4_35483 Corchorus olitorius HOM05D000032 ORTHO05D007039 7.8e-09 65.1 49 63.3
Gohir.A02G068600 Gossypium hirsutum HOM05D000032 ORTHO05D007039 7.8e-09 65.1 49 63.3
Gohir.D02G075100 Gossypium hirsutum HOM05D000032 ORTHO05D007039 7.8e-09 65.1 49 63.3
Gorai.005G084500 Gossypium raimondii HOM05D000032 ORTHO05D007039 7.8e-09 65.1 49 63.3
GSVIVG01009983001 Vitis vinifera HOM05D000032 ORTHO05D007039 7.8e-09 65.1 49 63.3
BcaNung04684 Brassica carinata HOM05D000032 ORTHO05D007039 1.0e-08 64.7 52 59.6
PSO017G0672 Papaver somniferum HOM05D000032 ORTHO05D007039 1.0e-08 64.7 49 65.3
PSO478G2531 Papaver somniferum HOM05D000032 ORTHO05D007039 1.0e-08 64.7 49 65.3
Hma1.2p1_0107F.1_g051280 Hydrangea macrophylla HOM05D000032 ORTHO05D007039 1.3e-08 64.3 49 63.3
Hma1.2p1_0107F.1_g051290 Hydrangea macrophylla HOM05D000032 ORTHO05D007039 1.3e-08 64.3 49 63.3
MBI03_g28958_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007039 1.3e-08 64.3 49 63.3
Manes.04G035200 Manihot esculenta HOM05D000032 ORTHO05D007039 1.3e-08 64.3 70 48.6
CsaV3_1G045380 Cucumis sativus L. HOM05D000032 ORTHO05D007039 1.7e-08 63.9 49 63.3
Phvul.010G059900 Phaseolus vulgaris HOM05D000032 ORTHO05D007039 1.7e-08 63.9 49 61.2
Prupe.2G131100 Prunus persica HOM05D000032 ORTHO05D007039 1.7e-08 63.9 49 63.3
Thecc.08G139100 Theobroma cacao HOM05D000032 ORTHO05D007039 1.7e-08 63.9 49 61.2
VMungo0331G2050 Vigna mungo HOM05D000032 ORTHO05D007039 1.7e-08 63.9 49 61.2
BcaB02g07093 Brassica carinata HOM05D000032 ORTHO05D007039 2.3e-08 63.5 49 61.2
BcaB02g07095 Brassica carinata HOM05D000032 ORTHO05D007039 2.3e-08 63.5 49 61.2
BcaNung04681 Brassica carinata HOM05D000032 ORTHO05D007039 2.3e-08 63.5 49 61.2
A07p28090 Brassica napus HOM05D000032 ORTHO05D007039 2.3e-08 63.5 49 61.2
C06p31480 Brassica napus HOM05D000032 ORTHO05D007039 2.3e-08 63.5 49 61.2
BolC6t38280H Brassica oleracea HOM05D000032 ORTHO05D007039 2.3e-08 63.5 49 61.2
BraA07t30454Z Brassica rapa HOM05D000032 ORTHO05D007039 2.3e-08 63.5 49 61.2
Ca_18908_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007039 2.3e-08 63.5 50 58.0
Sabra05G0142000 Salix brachista HOM05D001345 ORTHO05D007039 2.3e-08 63.5 52 59.6
MBI02_g35824_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007039 3.0e-08 63.2 49 61.2
CANSAT80G2781 Cannabis sativa HOM05D000032 ORTHO05D007039 3.9e-08 62.8 49 61.2
CAN.G313.11 Capsicum annuum HOM05D000032 ORTHO05D007039 3.9e-08 62.8 49 59.2
CDE11G0213 Ceratophyllum demersum HOM05D000032 ORTHO05D007039 3.9e-08 62.8 49 61.2
DCAR_014398 Daucus carota HOM05D000032 ORTHO05D007039 3.9e-08 62.8 71 52.1
FvH4_2g15160 Fragaria vesca HOM05D000032 ORTHO05D007039 3.9e-08 62.8 68 51.5
FAN15G1637 Fragaria x ananassa HOM05D000032 ORTHO05D007039 3.9e-08 62.8 68 51.5
FAN20G1738 Fragaria x ananassa HOM05D001345 ORTHO05D007039 3.9e-08 62.8 68 51.5
FAN24G0655 Fragaria x ananassa HOM05D000032 ORTHO05D007039 3.9e-08 62.8 68 51.5
FAN27G2140 Fragaria x ananassa HOM05D000032 ORTHO05D007039 3.9e-08 62.8 68 51.5
Glyma.03G001200 Glycine max HOM05D000032 ORTHO05D007039 3.9e-08 62.8 55 52.7
Glyma.16G221700 Glycine max HOM05D000032 ORTHO05D007039 3.9e-08 62.8 49 59.2
Lju3549A0T30 Lonicera japonica HOM05D000032 ORTHO05D007039 3.9e-08 62.8 55 54.5
RcHm_v2.0_Chr6g0277821 Rosa chinensis HOM05D000032 ORTHO05D007039 3.9e-08 62.8 68 51.5
AUR62007669 Chenopodium quinoa HOM05D000032 ORTHO05D007039 5.0e-08 62.4 52 53.8
AUR62013465 Chenopodium quinoa HOM05D000032 ORTHO05D007039 5.0e-08 62.4 52 53.8
Ciclev10000341m.g Citrus clementina HOM05D000032 ORTHO05D007039 5.0e-08 62.4 49 61.2
Cc00_g22660 Coffea canephora HOM05D000032 ORTHO05D007039 5.0e-08 62.4 49 61.2
MD07G1108300 Malus domestica HOM05D000032 ORTHO05D007039 5.0e-08 62.4 49 59.2
SMO361G0600 Selaginella moellendorffii HOM05D000032 ORTHO05D007039 5.0e-08 62.4 49 59.2
TWI32G0140 Tripterygium wilfordii HOM05D000032 ORTHO05D007039 5.0e-08 62.4 54 55.6
Aa31LG4G7090 Aethionema arabicum HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
AagrBONN_evm.TU.Sc2ySwM_228.4830 Anthoceros agrestis HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
AL2G37210 Arabidopsis lyrata HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
AT1G77030 Arabidopsis thaliana HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
Carub.0002s2395 Capsella rubella HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
CARHR070560 Cardamine hirsuta HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
Thhalv10000296m.g Eutrema salsugineum HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
Thhalv10018119m.g Eutrema salsugineum HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
Nitab4.5_0003348g0020 Nicotiana tabacum HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 61.2
Nitab4.5_0003942g0070 Nicotiana tabacum HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 61.2
Potri.005G185900 Populus trichocarpa HOM05D000032 ORTHO05D007039 6.6e-08 62.0 52 57.7
Sp5g32190 Schrenkiella parvula HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
SMO361G0757 Selaginella moellendorffii HOM05D000032 ORTHO05D007039 6.6e-08 62.0 49 59.2
Zm00001eb179010 Zea mays HOM05D000032 ORTHO05D007039 6.6e-08 62.0 50 60.0
CiPaw.16G019200 Carya illinoinensis HOM05D000032 ORTHO05D007039 8.6e-08 61.6 49 59.2
ATR0584G125 Amborella trichopoda HOM05D000032 ORTHO05D007039 1.1e-07 61.2 66 50.0
Peaxi162Scf00066g01631 Petunia axillaris HOM05D000032 ORTHO05D007039 1.1e-07 61.2 52 57.7
Pp3c14_6810 Physcomitrium patens HOM05D000032 ORTHO05D007039 1.1e-07 61.2 49 59.2
Hund17378 Selenicereus undatus HOM05D000032 ORTHO05D007039 1.1e-07 61.2 48 60.4
Lj4A689G43 Lonicera japonica HOM05D000032 ORTHO05D007039 1.9e-07 60.5 55 52.7
Atru.chr2.2494 Acer truncatum HOM05D000032 ORTHO05D007039 2.5e-07 60.1 49 61.2
ECA248G0200 Erigeron canadensis HOM05D000032 ORTHO05D007039 2.5e-07 60.1 47 61.7
Aqoxy5G02326 Aquilegia oxysepala HOM05D000032 ORTHO05D007039 3.3e-07 59.7 46 63.0
Mapoly0165s0019 Marchantia polymorpha HOM05D000032 ORTHO05D007039 3.3e-07 59.7 56 50.0
Os08g0416100 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007039 3.3e-07 59.7 54 50.0
Cpa.g.sc26.76 Carica papaya HOM05D000032 ORTHO05D007039 4.3e-07 59.3 49 55.1
SHI09252 Sapria himalayana HOM05D000032 ORTHO05D007039 4.3e-07 59.3 49 59.2
vmacro05140 Vaccinium macrocarpon HOM05D000032 ORTHO05D007039 4.3e-07 59.3 57 56.1
arahy.Tifrunner.gnm1.ann1.5XB3VI Arachis hypogaea HOM05D000032 ORTHO05D007039 5.6e-07 58.9 54 50.0
arahy.Tifrunner.gnm1.ann1.KPVC5H Arachis hypogaea HOM05D000032 ORTHO05D007039 5.6e-07 58.9 54 50.0
EL10Ac1g01414 Beta vulgaris HOM05D000032 ORTHO05D007039 7.3e-07 58.5 49 59.2
Rhsim07G0177900 Rhododendron simsii HOM05D003181 ORTHO05D007039 7.3e-07 58.5 49 59.2
Lsat_1_v5_gn_1_39880 Lactuca sativa HOM05D000703 ORTHO05D007039 9.5e-07 58.2 47 59.6
TPR.G34855 Trifolium pratense HOM05D000032 ORTHO05D007039 9.5e-07 58.2 54 51.9
Lalb_Chr13g0294911 Lupinus albus HOM05D000032 ORTHO05D007039 1.2e-06 57.8 45 57.8
Psat7g166920 Pisum sativum HOM05D000032 ORTHO05D007039 4.7e-06 55.8 50 54.0
Actinidia15182 Actinidia chinensis HOM05D000032 ORTHO05D007039 8.1e-06 55.1 57 50.9


User provided reference genes

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