Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 3.0e-126 455.3 249 100.0
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 1.4e-99 366.7 243 81.9
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 6.8e-94 347.8 247 76.1
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 8.1e-87 324.3 243 70.8
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 8.1e-87 324.3 243 72.0
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.1e-86 323.9 244 71.3
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 1.1e-86 323.9 244 72.5
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 4.0e-86 322.0 247 69.2
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 4.0e-86 322.0 244 71.7
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 1.5e-85 320.1 240 69.6
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 5.8e-85 318.2 240 71.2
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 4.1e-83 312.0 240 70.0
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 7.1e-83 311.2 244 68.9
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 2.1e-82 309.7 244 70.1
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 8.6e-81 304.3 244 67.6
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 9.5e-80 300.8 234 68.4
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 2.8e-79 299.3 247 66.8
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 3.6e-79 298.9 252 65.5
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 4.7e-79 298.5 239 65.7
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 6.8e-78 294.7 212 76.9
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 2.0e-77 293.1 223 69.5
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 2.2e-76 289.7 271 61.3
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 2.9e-76 289.3 247 64.4
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 4.9e-76 288.5 249 65.1
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 8.4e-76 287.7 240 65.0
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 3.2e-75 285.8 245 64.1
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 9.2e-75 284.3 246 61.8
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 4.6e-74 282.0 240 65.0
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 7.8e-74 281.2 246 63.4
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 1.3e-73 280.4 244 62.7
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 6.6e-73 278.1 254 61.4
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 8.7e-73 277.7 241 62.2
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.1e-72 277.3 243 62.6
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.1e-72 277.3 243 62.6
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 1.5e-72 276.9 254 61.8
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 1.5e-72 276.9 254 62.2
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 1.5e-72 276.9 255 60.8
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 1.9e-72 276.6 208 69.2
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 3.3e-72 275.8 259 59.8
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 3.3e-72 275.8 258 60.9
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 5.6e-72 275.0 243 62.6
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 5.6e-72 275.0 241 62.2
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 9.6e-72 274.2 217 65.9
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.2e-71 273.9 217 65.4
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 1.8e-70 270.0 269 59.9
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 3.1e-70 269.2 239 61.5
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 3.1e-70 269.2 239 61.5
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 4.0e-70 268.9 238 62.2
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 5.2e-70 268.5 207 67.1
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 6.9e-70 268.1 207 66.2
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 2.0e-69 266.5 215 66.0
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 2.0e-69 266.5 243 61.3
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 3.4e-69 265.8 240 62.9
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 4.4e-69 265.4 276 57.2
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 7.6e-69 264.6 235 60.9
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 7.6e-69 264.6 253 59.7
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 9.9e-69 264.2 241 60.6
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 1.3e-68 263.8 246 58.5
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 1.3e-68 263.8 247 59.9
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 4.9e-68 261.9 245 59.2
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 4.9e-68 261.9 214 66.8
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.9e-67 260.0 238 60.9
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 2.4e-67 259.6 209 65.1
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 2.4e-67 259.6 254 58.3
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 3.2e-67 259.2 245 59.6
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 3.2e-67 259.2 259 58.7
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 3.5e-66 255.8 226 61.5
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 4.6e-66 255.4 224 62.5
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 4.6e-66 255.4 217 66.8
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 7.8e-66 254.6 243 59.3
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 2.3e-65 253.1 230 59.6
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.0e-65 252.7 206 65.5
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 3.3e-64 249.2 301 51.5
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 4.3e-64 248.8 210 63.8
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 2.1e-63 246.5 210 62.4
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 6.2e-63 245.0 244 57.0
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 8.1e-63 244.6 237 59.1
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 1.4e-62 243.8 210 63.8
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 1.8e-62 243.4 214 61.7
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 4.0e-62 242.3 205 63.9
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 9.9e-61 237.7 239 58.2
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 9.9e-61 237.7 241 55.6
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 1.7e-60 236.9 238 57.1
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 3.8e-60 235.7 254 55.1
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 1.9e-59 233.4 214 60.3
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 9.3e-59 231.1 236 57.6
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 1.2e-58 230.7 208 58.2
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 1.6e-58 230.3 248 52.8
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 2.1e-58 229.9 210 60.5
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 4.6e-58 228.8 224 58.9
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 1.3e-57 227.3 224 57.6
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 3.0e-57 226.1 226 57.1
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 3.0e-57 226.1 224 57.1
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.1e-57 225.3 223 57.8
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 1.3e-55 220.7 223 57.4
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 1.3e-55 220.7 166 69.3
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 1.6e-55 220.3 329 43.5
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 2.8e-55 219.5 307 46.3
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 2.4e-54 216.5 210 59.0
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 5.3e-54 215.3 217 58.1
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 1.2e-53 214.2 157 72.0
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 5.8e-53 211.8 204 57.8
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 9.9e-53 211.1 211 55.0
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 1.3e-52 210.7 234 55.6
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 3.8e-52 209.1 225 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 8.4e-52 208.0 210 54.3
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 1.4e-51 207.2 316 45.6
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 2.4e-51 206.5 213 57.7
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 1.6e-50 203.8 226 49.6
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 2.1e-50 203.4 282 45.7
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.7e-50 203.0 244 50.0
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 3.5e-50 202.6 196 58.2
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 7.9e-50 201.4 211 53.1
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.5e-48 197.2 164 64.6
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.3e-47 194.1 165 63.6
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 1.8e-46 190.3 149 66.4
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 3.4e-45 186.0 168 61.3
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 1.1e-43 181.0 243 49.0
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 7.6e-37 158.3 224 44.2
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 1.6e-34 150.6 153 53.6
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 7.9e-34 148.3 170 48.2
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 1.7e-28 130.6 119 56.3
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 8.8e-25 118.2 226 39.4
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 6.3e-23 112.1 240 37.5
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 1.4e-22 110.9 106 63.2
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 3.1e-22 109.8 180 37.2
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 7.0e-22 108.6 83 63.9
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 1.2e-21 107.8 91 63.7
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.0e-20 104.8 127 52.8
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 2.9e-20 103.2 208 38.0
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 3.8e-20 102.8 82 68.3
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 5.5e-19 99.0 83 63.9
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 3.9e-17 92.8 70 70.0
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 6.3e-15 85.5 187 39.0
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 4.1e-14 82.8 257 28.0
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 4.1e-14 82.8 59 66.1
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.6e-13 80.9 208 34.1
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.9e-13 79.0 178 36.5
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 5.0e-12 75.9 56 64.3
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 2.7e-10 70.1 44 79.5
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 2.6e-08 63.5 55 67.3
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.3e-07 61.2 55 65.5
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 2.2e-07 60.5 70 54.3
Aqoxy107s001 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.1e-06 58.2 74 48.6


User provided reference genes

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