Gene: AT1G12650
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G12650
- Transcript Identifier AT1G12650.2
- Gene Type Coding gene
- Location Chr1 : 4306183-4307673 : positive
Gene Family Information
- ID HOM05D004958
- #Genes/#Species 150/95
- Phylogenetic origin
- ID ORTHO05D005983
- #Genes/#Species 149/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G12650.2
- uniprot Q8W1E4
Descriptions
- Description rRNA biogenesis RRP36-like protein
- Computational description unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
- Computational description unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000469 | IEA | Gene Ontology | cleavage involved in rRNA processing | |
| GO:0000469 | IEA | InterPro | cleavage involved in rRNA processing | |
| GO:0000462 | IBA | Gene Ontology | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1 |
| GO:0006364 | IEA | GOA Database | rRNA processing | |
| GO:0042254 | IEA | GOA Database | ribosome biogenesis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0030686 | IBA | Gene Ontology | 90S preribosome | 1 |
| GO:0005730 | IEA | GOA Database | nucleolus | |
| GO:0005730 | IBA | Gene Ontology | nucleolus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR009292 | rRNA biogenesis protein RRP36 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |