Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.1e-89 331.3 155 100.0
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.6e-56 223.0 143 73.4
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.1e-53 212.6 141 70.2
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 6.2e-53 211.1 141 70.9
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.4e-49 199.1 140 65.0
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 5.1e-47 191.4 132 62.9
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 4.3e-46 188.3 144 56.2
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 5.6e-46 188.0 144 56.2
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.3e-45 186.8 132 66.7
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 3.6e-45 185.3 128 64.1
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 6.2e-45 184.5 144 56.2
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.8e-44 183.0 132 62.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 3.1e-44 182.2 127 63.8
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.4e-43 178.7 127 63.0
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 5.8e-43 177.9 146 58.9
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.9e-43 177.2 132 61.4
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.7e-42 176.4 133 61.7
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.7e-42 176.4 128 61.7
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.7e-42 176.4 132 57.6
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 2.2e-42 176.0 131 60.3
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.2e-42 176.0 131 60.3
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.9e-42 175.6 132 62.9
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 8.4e-42 174.1 126 61.1
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.1e-41 173.7 126 61.9
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-41 173.3 131 60.3
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.4e-41 173.3 127 63.8
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.4e-41 173.3 133 57.1
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.9e-41 172.9 128 62.5
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.4e-41 172.6 151 55.6
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.2e-41 172.2 128 61.7
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 3.2e-41 172.2 134 59.7
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 4.2e-41 171.8 128 60.9
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.2e-41 171.8 120 61.7
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 5.4e-41 171.4 127 60.6
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 5.4e-41 171.4 128 60.2
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 5.4e-41 171.4 126 61.1
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 7.1e-41 171.0 135 61.5
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.1e-41 171.0 133 57.1
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 9.3e-41 170.6 131 59.5
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.3e-41 170.6 131 59.5
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 9.3e-41 170.6 127 59.8
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 9.3e-41 170.6 127 59.8
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.2e-40 170.2 132 60.6
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.2e-40 170.2 114 64.0
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.2e-40 170.2 141 56.0
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.1e-40 169.5 120 58.3
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 2.1e-40 169.5 127 59.8
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 3.5e-40 168.7 136 58.1
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.0e-39 167.2 145 53.8
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.0e-39 167.2 121 62.0
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.3e-39 166.8 127 58.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.3e-39 166.8 127 58.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.7e-39 166.4 125 60.0
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 3.0e-39 165.6 143 53.1
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.0e-39 165.6 120 60.0
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 3.0e-39 165.6 127 57.5
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 3.0e-39 165.6 121 62.0
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.1e-39 164.9 121 61.2
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 5.1e-39 164.9 144 53.5
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 5.1e-39 164.9 134 56.7
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 8.7e-39 164.1 126 58.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 8.7e-39 164.1 153 51.0
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.1e-38 163.7 118 61.9
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.1e-38 163.7 119 58.8
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.5e-38 163.3 130 56.2
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-38 163.3 114 60.5
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.5e-38 163.3 114 59.6
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.9e-38 162.9 141 56.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 3.3e-38 162.2 121 61.2
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 4.3e-38 161.8 121 59.5
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 4.3e-38 161.8 133 57.9
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 4.3e-38 161.8 133 57.9
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 5.6e-38 161.4 127 55.9
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 5.6e-38 161.4 132 54.5
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 9.6e-38 160.6 123 61.0
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 9.6e-38 160.6 148 52.0
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 9.6e-38 160.6 148 52.0
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.3e-37 160.2 125 58.4
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-37 159.8 127 55.1
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.6e-37 159.8 121 60.3
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.1e-37 159.5 119 59.7
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 3.6e-37 158.7 126 57.1
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 3.6e-37 158.7 128 57.8
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 6.2e-37 157.9 136 52.9
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 6.2e-37 157.9 121 57.9
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 6.2e-37 157.9 153 49.7
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.1e-36 157.1 123 59.3
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.1e-36 157.1 123 59.3
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.1e-36 157.1 123 59.3
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-36 156.8 128 57.0
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.4e-36 156.8 112 60.7
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.4e-36 156.8 121 57.9
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.4e-36 156.8 120 57.5
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 2.4e-36 156.0 123 57.7
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 2.4e-36 156.0 123 57.7
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 2.4e-36 156.0 123 57.7
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 2.4e-36 156.0 123 57.7
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 3.1e-36 155.6 123 57.7
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 3.1e-36 155.6 123 57.7
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.1e-36 155.6 131 54.2
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 4.0e-36 155.2 128 56.2
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 5.3e-36 154.8 125 57.6
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 6.9e-36 154.5 128 55.5
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 6.9e-36 154.5 125 55.2
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.5e-35 153.3 118 59.3
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.5e-35 153.3 121 57.0
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.0e-35 152.9 113 58.4
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 2.6e-35 152.5 114 60.5
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.6e-35 152.5 120 58.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.5e-35 151.8 126 54.8
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.5e-35 151.8 126 54.8
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 5.8e-35 151.4 118 58.5
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 9.9e-35 150.6 121 57.0
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.7e-34 149.8 134 53.7
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.7e-34 149.8 126 53.2
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.8e-34 148.7 120 56.7
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 6.4e-34 147.9 133 52.6
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 6.4e-34 147.9 126 54.0
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 8.4e-34 147.5 134 53.0
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.1e-33 147.1 127 52.8
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.4e-33 146.7 135 51.1
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.4e-33 146.7 126 55.6
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.2e-33 145.2 134 53.0
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 7.1e-33 144.4 127 52.8
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.3e-33 144.1 109 57.8
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.2e-32 143.7 131 54.2
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.7e-32 142.5 127 48.8
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 4.6e-32 141.7 127 48.8
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 7.9e-32 141.0 114 54.4
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.3e-31 140.2 119 51.3
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.3e-31 139.4 119 52.9
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.9e-31 138.7 128 52.3
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.6e-30 134.8 117 53.8
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.6e-29 133.3 113 54.0
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.2e-29 131.3 103 56.3
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.2e-27 127.1 118 48.3
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 3.8e-26 122.1 118 44.9
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.4e-26 120.9 95 57.9
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 3.2e-25 119.0 96 55.2
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.1e-24 116.3 119 48.7
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.7e-24 115.9 127 44.1
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 4.6e-24 115.2 122 41.0
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.0e-23 114.0 93 54.8
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.3e-23 113.6 139 41.7
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.3e-23 113.6 123 43.9
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.3e-23 112.8 92 54.3
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.9e-23 112.1 85 58.8
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 6.7e-23 111.3 123 43.1
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 3.7e-21 105.5 118 41.5
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 4.8e-21 105.1 109 49.5
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-20 102.8 82 54.9
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 2.6e-19 99.4 112 44.6
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 3.4e-19 99.0 107 41.1
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.5e-19 98.6 109 45.0
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.7e-18 96.7 141 36.9
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 5.0e-18 95.1 134 42.5
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 7.1e-17 91.3 114 37.7
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 7.1e-17 91.3 114 37.7
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.1e-16 89.7 118 37.3
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.7e-16 89.4 107 40.2
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 2.7e-16 89.4 114 36.0
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.0e-15 87.4 73 56.2
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.1e-15 85.1 69 55.1
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 8.7e-15 84.3 117 42.7
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 8.7e-15 84.3 56 64.3
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 2.2e-10 69.7 113 35.4
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 6.5e-10 68.2 64 43.8
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 6.1e-08 61.6 40 65.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 7.9e-08 61.2 98 35.7


User provided reference genes

Program Settings