Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 8.4e-166 587.0 312 100.0
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 7.4e-114 414.5 310 71.0
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 5.9e-111 404.8 320 69.4
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 4.8e-97 358.6 315 65.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 8.2e-97 357.8 318 67.6
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 5.9e-95 351.7 308 62.0
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.3e-94 350.5 315 64.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.3e-94 350.5 313 62.0
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 2.9e-94 349.4 308 61.7
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 5.0e-94 348.6 319 62.4
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.1e-93 347.4 318 62.3
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 2.5e-93 346.3 308 61.0
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 3.2e-93 345.9 315 63.5
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 4.2e-93 345.5 333 59.8
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 7.2e-93 344.7 235 71.1
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 2.7e-92 342.8 281 67.6
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 3.6e-92 342.4 237 70.5
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 3.6e-92 342.4 313 62.0
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 4.7e-92 342.0 240 72.5
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.0e-91 340.9 288 64.6
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 1.8e-91 340.1 232 74.6
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 2.3e-91 339.7 315 58.7
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 2.3e-91 339.7 307 60.9
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.3e-91 339.7 239 70.3
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 3.0e-91 339.3 265 66.0
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 5.2e-91 338.6 306 61.8
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 5.2e-91 338.6 306 61.4
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 8.8e-91 337.8 320 62.5
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 8.8e-91 337.8 319 62.7
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.2e-90 337.4 309 58.9
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.2e-90 337.4 286 63.3
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 2.0e-90 336.7 311 60.5
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 3.4e-90 335.9 266 65.8
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 4.4e-90 335.5 297 63.3
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.4e-90 335.5 290 61.7
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 7.5e-90 334.7 313 61.0
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 9.8e-90 334.3 296 60.5
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 9.8e-90 334.3 313 57.8
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.3e-89 334.0 310 60.0
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.3e-89 334.0 313 59.7
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 2.2e-89 333.2 303 60.1
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 2.8e-89 332.8 297 61.6
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 2.8e-89 332.8 234 72.2
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 6.3e-89 331.6 250 66.0
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 6.3e-89 331.6 290 61.7
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 8.3e-89 331.3 296 60.1
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 8.3e-89 331.3 284 62.3
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 8.3e-89 331.3 315 58.4
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 1.1e-88 330.9 297 60.9
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.1e-88 330.9 291 62.5
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 1.4e-88 330.5 296 60.1
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 1.4e-88 330.5 294 60.2
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.4e-88 329.7 310 62.3
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 5.4e-88 328.6 304 59.2
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 5.4e-88 328.6 287 62.4
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 7.0e-88 328.2 322 58.4
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 7.0e-88 328.2 317 59.3
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.2e-87 327.4 307 59.3
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 1.2e-87 327.4 242 66.5
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.6e-87 327.0 226 70.4
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 2.7e-87 326.2 307 61.2
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 2.7e-87 326.2 236 69.5
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 3.5e-87 325.9 240 67.1
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 4.5e-87 325.5 304 58.9
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 5.9e-87 325.1 308 58.4
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 7.7e-87 324.7 243 68.3
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 7.7e-87 324.7 308 58.4
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.3e-86 323.9 317 58.0
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.3e-86 323.9 317 58.0
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 3.8e-86 322.4 236 69.9
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 5.0e-86 322.0 236 67.4
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 5.0e-86 322.0 236 69.1
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 6.5e-86 321.6 312 59.9
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 6.5e-86 321.6 234 68.8
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.9e-85 320.1 306 59.8
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.9e-85 320.1 312 60.6
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 2.5e-85 319.7 315 59.0
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 9.5e-85 317.8 307 57.3
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.1e-84 316.6 251 66.9
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 2.8e-84 316.2 290 63.1
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 6.1e-84 315.1 287 61.0
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 8.0e-84 314.7 231 66.7
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.4e-83 313.9 238 67.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.3e-83 313.2 236 64.4
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 6.8e-83 311.6 321 59.8
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 2.0e-82 310.1 233 67.4
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 4.4e-82 308.9 309 57.3
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 7.5e-82 308.1 309 55.7
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.7e-81 307.0 309 57.0
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.8e-81 306.2 293 55.6
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.9e-81 305.4 293 55.6
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 4.9e-81 305.4 311 56.9
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 6.3e-81 305.1 309 54.4
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 5.0e-78 295.4 217 69.6
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.6e-76 290.4 256 64.1
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.0e-75 287.7 212 67.5
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 5.2e-75 285.4 211 67.8
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 2.6e-74 283.1 228 63.6
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.4e-72 277.3 234 63.2
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 4.6e-71 272.3 237 60.3
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 1.0e-70 271.2 256 55.5
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.5e-66 257.3 228 59.6
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 4.4e-66 255.8 201 64.2
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 3.7e-65 252.7 234 56.0
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 3.2e-64 249.6 228 58.3
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 2.7e-63 246.5 210 60.0
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.7e-63 246.5 210 60.0
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 4.3e-61 239.2 223 55.2
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 8.1e-60 235.0 223 54.3
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 1.4e-59 234.2 229 52.0
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.2e-58 231.1 211 62.6
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 1.5e-58 230.7 185 66.5
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.3e-57 227.6 279 47.7
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.7e-57 226.1 271 48.7
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 2.1e-55 220.3 212 59.9
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.0e-54 218.0 203 56.2
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 3.0e-54 216.5 221 49.8
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 6.6e-54 215.3 306 47.1
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 4.3e-53 212.6 239 50.2
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 5.2e-51 205.7 166 60.2
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-42 177.6 177 53.7
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 2.7e-31 140.2 214 40.7
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 7.9e-31 138.7 214 37.9
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.6e-29 131.7 128 57.0
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 2.4e-27 127.1 108 58.3
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.4e-25 118.6 196 38.8
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 7.9e-23 112.1 211 30.8
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.5e-21 107.8 67 74.6
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 1.1e-19 101.7 59 74.6
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-13 81.3 92 44.6
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 9.7e-13 78.6 52 73.1
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 2.2e-12 77.4 47 72.3
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 6.9e-11 72.4 89 51.7
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 2.0e-10 70.9 81 51.9
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 9.3e-08 62.0 36 77.8
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 9.3e-08 62.0 48 64.6
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 6.1e-07 59.3 70 50.0
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.1e-06 56.2 48 52.1
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 5.1e-06 56.2 45 62.2


User provided reference genes

Program Settings