Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold185G40083 Striga asiatica HOM05D002303 ORTHO05D012836 5.4e-164 580.9 279 100.0
SGA_v2.0_scaffold83G26437 Striga asiatica HOM05D000006 ORTHO05D000001 1.4e-63 247.3 338 46.7
SGA_v2.0_scaffold453G51880 Striga asiatica HOM05D000959 ORTHO05D000775 1.1e-47 194.5 161 63.4
SGA_v2.0_scaffold408G51088 Striga asiatica HOM05D006022 ORTHO05D007649 2.9e-45 186.4 158 63.9
SGA_v2.0_scaffold71G23746 Striga asiatica HOM05D000234 ORTHO05D012836 2.2e-32 143.7 141 57.4
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 9.2e-31 138.3 148 52.7
SGA_v2.0_scaffold144G35972 Striga asiatica HOM05D000942 ORTHO05D012836 8.0e-27 125.2 224 37.5
SGA_v2.0_scaffold152G36792 Striga asiatica HOM05D001336 ORTHO05D012836 1.8e-26 124.0 144 51.4
SGA_v2.0_scaffold23G10127 Striga asiatica HOM05D000234 ORTHO05D012836 8.9e-26 121.7 154 46.8
SGA_v2.0_scaffold29G12117 Striga asiatica HOM05D001336 ORTHO05D000001 5.4e-23 112.5 290 33.8
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.9e-20 104.0 57 82.5
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 1.9e-20 104.0 57 82.5
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 4.3e-20 102.8 57 80.7
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 4.3e-20 102.8 57 80.7
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 4.3e-20 102.8 57 80.7
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 4.3e-20 102.8 57 80.7
Oeu044822.1 Olea europaea HOM05D002303 ORTHO05D006504 4.3e-20 102.8 57 82.5
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 4.3e-20 102.8 57 80.7
TWI36G0505 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 5.6e-20 102.4 57 80.7
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 7.3e-20 102.1 57 78.9
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 1.2e-19 101.3 57 78.9
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 1.2e-19 101.3 57 78.9
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 1.2e-19 101.3 57 78.9
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 1.2e-19 101.3 57 78.9
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 1.2e-19 101.3 57 78.9
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 1.2e-19 101.3 57 78.9
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 2.8e-19 100.1 57 77.2
TAR374G1747 Trochodendron aralioides HOM05D002303 ORTHO05D006504 2.8e-19 100.1 57 77.2
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 3.6e-19 99.8 57 78.9
Os03g0397500 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D006504 4.7e-19 99.4 57 77.2
Zm00001eb019350 Zea mays HOM05D002303 ORTHO05D006504 6.2e-19 99.0 57 75.4
Zm00001eb392750 Zea mays HOM05D002303 ORTHO05D006504 6.2e-19 99.0 57 75.4
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 8.1e-19 98.6 57 75.4
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 8.1e-19 98.6 53 83.0
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 8.1e-19 98.6 53 83.0
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 8.1e-19 98.6 57 80.7
Prupe.1G254100 Prunus persica HOM05D002303 ORTHO05D006504 8.1e-19 98.6 53 83.0
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 1.1e-18 98.2 55 78.2
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 1.1e-18 98.2 55 78.2
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 1.1e-18 98.2 55 78.2
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 1.1e-18 98.2 57 78.9
Ciclev10031042m.g Citrus clementina HOM05D002303 ORTHO05D006504 1.4e-18 97.8 55 78.2
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 1.8e-18 97.4 57 77.2
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 1.8e-18 97.4 57 77.2
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.8e-18 97.4 57 78.9
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.8e-18 97.4 57 78.9
Lsat_1_v5_gn_9_45861 Lactuca sativa HOM05D002303 ORTHO05D006504 2.3e-18 97.1 57 75.4
RcHm_v2.0_Chr5g0051741 Rosa chinensis HOM05D002303 ORTHO05D006504 2.3e-18 97.1 53 79.2
SGA_v2.0_scaffold19G08777 Striga asiatica HOM05D002303 ORTHO05D403914 2.3e-18 97.1 72 70.8
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 3.1e-18 96.7 57 73.7
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 6.8e-18 95.5 55 76.4
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 6.8e-18 95.5 57 75.4
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 1.5e-17 94.4 57 71.9
SGA_v2.0_scaffold169G38721 Striga asiatica HOM05D002942 ORTHO05D003270 1.5e-17 94.4 298 31.5
CSS0030675 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 7.5e-17 92.0 58 74.1
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 9.9e-17 91.7 51 84.3
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 9.9e-17 91.7 51 84.3
Sp4g02400 Schrenkiella parvula HOM05D002303 ORTHO05D006504 1.7e-16 90.9 55 74.5
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 2.2e-16 90.5 46 91.3
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 2.2e-16 90.5 46 91.3
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 2.2e-16 90.5 46 91.3
CSS0020077 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 2.9e-16 90.1 48 85.4
Oeu044823.1 Olea europaea HOM05D002303 ORTHO05D006504 3.7e-16 89.7 49 83.7
COL.COLO4_06925 Corchorus olitorius HOM05D002303 ORTHO05D006504 4.9e-16 89.4 46 89.1
Dinv24860 Davidia involucrata HOM05D002303 ORTHO05D006504 6.4e-16 89.0 46 87.0
Duzib168G1309 Durio zibethinus HOM05D002303 ORTHO05D006504 6.4e-16 89.0 46 87.0
Gohir.A05G001900 Gossypium hirsutum HOM05D002303 ORTHO05D006504 6.4e-16 89.0 46 87.0
QL03p061244 Quercus lobata HOM05D002303 ORTHO05D006504 6.4e-16 89.0 46 87.0
Thecc.09G187500 Theobroma cacao HOM05D002303 ORTHO05D006504 6.4e-16 89.0 46 87.0
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 8.3e-16 88.6 44 93.2
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 8.3e-16 88.6 44 93.2
Gohir.D05G002200 Gossypium hirsutum HOM05D002303 ORTHO05D006504 8.3e-16 88.6 46 84.8
Gorai.009G002100 Gossypium raimondii HOM05D002303 ORTHO05D006504 8.3e-16 88.6 46 84.8
Actinidia13510 Actinidia chinensis HOM05D002303 ORTHO05D006504 1.1e-15 88.2 46 87.0
CiPaw.06G072200 Carya illinoinensis HOM05D002303 ORTHO05D006504 1.1e-15 88.2 49 79.6
Hma1.2p1_0867F.1_g230200 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 1.1e-15 88.2 46 87.0
VMungo0720G0741 Vigna mungo HOM05D002303 ORTHO05D006504 1.1e-15 88.2 46 87.0
Manes.12G029100 Manihot esculenta HOM05D002303 ORTHO05D006504 1.4e-15 87.8 46 84.8
QL04p079730 Quercus lobata HOM05D002303 ORTHO05D006504 1.4e-15 87.8 60 73.3
GSVIVG01020240001 Vitis vinifera HOM05D002303 ORTHO05D006504 1.4e-15 87.8 46 84.8
Sabra10G0042400 Salix brachista HOM05D002303 ORTHO05D006504 2.4e-15 87.0 48 81.2
Potri.010G064600 Populus trichocarpa HOM05D002303 ORTHO05D006504 4.1e-15 86.3 46 82.6
CSS0001865 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 5.4e-15 85.9 46 84.8
Sabra08G0132000 Salix brachista HOM05D002303 ORTHO05D006504 5.4e-15 85.9 46 82.6
Thhalv10007215m.g Eutrema salsugineum HOM05D002303 ORTHO05D006504 7.1e-15 85.5 48 81.2
PSO302G0183 Papaver somniferum HOM05D002303 ORTHO05D006504 9.2e-15 85.1 57 63.2
Aa31LG1G4340 Aethionema arabicum HOM05D002303 ORTHO05D006504 1.2e-14 84.7 48 81.2
Sed0003805 Sechium edule HOM05D002303 ORTHO05D006504 1.2e-14 84.7 56 71.4
EL10Ac6g13671 Beta vulgaris HOM05D002303 ORTHO05D006504 1.6e-14 84.3 48 79.2
Migut.L01412 Erythranthe guttata HOM05D002303 ORTHO05D006504 1.6e-14 84.3 47 85.1
QL07p042264 Quercus lobata HOM05D002303 ORTHO05D006504 1.6e-14 84.3 48 81.2
unitig_26.g10342 Utricularia gibba HOM05D002303 ORTHO05D006504 2.1e-14 84.0 47 83.0
Sed0001575 Sechium edule HOM05D002303 ORTHO05D006504 2.7e-14 83.6 44 84.1
PGSC0003DMG402030529 Solanum tuberosum HOM05D002303 ORTHO05D006504 2.7e-14 83.6 48 81.2
Ah.03g132680 Amaranthus hybridus HOM05D002303 ORTHO05D006504 6.0e-14 82.4 48 77.1
ECA246G1022 Erigeron canadensis HOM05D002303 ORTHO05D006504 6.0e-14 82.4 48 75.0
CARHR005840 Cardamine hirsuta HOM05D002303 ORTHO05D006504 7.8e-14 82.0 48 77.1
AUR62005376 Chenopodium quinoa HOM05D002303 ORTHO05D006504 7.8e-14 82.0 47 78.7
AUR62014039 Chenopodium quinoa HOM05D002303 ORTHO05D006504 7.8e-14 82.0 47 78.7
Ca_09780_v3 Cicer arietinum L. HOM05D002303 ORTHO05D006504 7.8e-14 82.0 47 80.9
RcHm_v2.0_Chr4g0443891 Rosa chinensis HOM05D002303 ORTHO05D006504 1.7e-13 80.9 45 82.2
Nn4g22801 Nelumbo nucifera HOM05D002303 ORTHO05D006504 2.3e-13 80.5 47 76.6
TAR622G0752 Trochodendron aralioides HOM05D002303 ORTHO05D006504 2.3e-13 80.5 47 76.6
TAR680G0002 Trochodendron aralioides HOM05D002303 ORTHO05D006504 2.3e-13 80.5 47 76.6
MBI04_g22061_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 3.0e-13 80.1 47 76.6
Hund05993 Selenicereus undatus HOM05D002303 ORTHO05D006504 3.0e-13 80.1 47 78.7
FvH4_4g34510 Fragaria vesca HOM05D002303 ORTHO05D006504 3.9e-13 79.7 45 80.0
FAN07G1287 Fragaria x ananassa HOM05D002303 ORTHO05D006504 3.9e-13 79.7 45 80.0
FAN12G1541 Fragaria x ananassa HOM05D002303 ORTHO05D006504 3.9e-13 79.7 45 80.0
Aqoxy3G02980 Aquilegia oxysepala HOM05D002303 ORTHO05D006504 6.6e-13 79.0 47 74.5
Actinidia15045 Actinidia chinensis HOM05D002303 ORTHO05D006504 1.5e-12 77.8 39 89.7
PSO063G5744 Papaver somniferum HOM05D002303 ORTHO05D006504 1.5e-12 77.8 47 72.3
PSO832G3043 Papaver somniferum HOM05D002303 ORTHO05D006504 1.5e-12 77.8 47 72.3
ATR0810G235 Amborella trichopoda HOM05D002303 ORTHO05D006504 2.5e-12 77.0 47 72.3
MBI03_g10297_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 2.5e-12 77.0 47 74.5
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 4.3e-12 76.3 53 58.5
PSO782G3482 Papaver somniferum HOM05D002303 ORTHO05D006504 5.6e-12 75.9 47 70.2
HPP92_008340 Vanilla planifolia HOM05D002303 ORTHO05D006504 5.6e-12 75.9 47 70.2
SEGI_38390 Sequoiadendron giganteum HOM05D002303 ORTHO05D023498 9.5e-12 75.1 65 50.8
CDE10G0556 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 1.6e-11 74.3 41 85.4
CDE10G0655 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 1.6e-11 74.3 41 85.4
Mapoly0001s0085 Marchantia polymorpha HOM05D002303 ORTHO05D006504 2.1e-11 73.9 47 70.2
AagrBONN_evm.TU.Sc2ySwM_228.161 Anthoceros agrestis HOM05D002303 ORTHO05D006504 2.8e-11 73.6 45 73.3
SGA_v2.0_scaffold8G04222 Striga asiatica HOM05D002303 ORTHO05D006504 3.6e-11 73.2 36 97.2
Psat6g141280 Pisum sativum HOM05D002303 ORTHO05D006504 8.1e-11 72.0 37 91.9
MSTRG.7897 Avicennia marina HOM05D002303 ORTHO05D006504 1.8e-10 70.9 36 94.4
CSS0022544 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.8e-10 70.9 37 89.2
Rhsim07G0188400 Rhododendron simsii HOM05D002303 ORTHO05D006504 1.8e-10 70.9 37 89.2
SalBow2G0957 Salvia bowleyana HOM05D002303 ORTHO05D006504 1.8e-10 70.9 36 94.4
SGA_v2.0_scaffold165G38248 Striga asiatica HOM05D002303 ORTHO05D006504 1.8e-10 70.9 36 94.4
Cpa.g.sc292.8 Carica papaya HOM05D002303 ORTHO05D006504 2.4e-10 70.5 37 86.5
HanXRQChr15g0490111 Helianthus annuus HOM05D002303 ORTHO05D006504 2.4e-10 70.5 37 86.5
THA.LOC104823641 Tarenaya hassleriana HOM05D002303 ORTHO05D006504 2.4e-10 70.5 37 86.5
CANSAT64G0961 Cannabis sativa HOM05D002303 ORTHO05D006504 3.1e-10 70.1 36 88.9
CBR_g42136 Chara braunii HOM05D002303 ORTHO05D006504 4.0e-10 69.7 47 66.0
Medtr1g072740 Medicago truncatula HOM05D002303 ORTHO05D006504 4.0e-10 69.7 36 91.7
Medtr4g102520 Medicago truncatula HOM05D002303 ORTHO05D006504 4.0e-10 69.7 36 91.7
TPR.G18556 Trifolium pratense HOM05D002303 ORTHO05D006504 4.0e-10 69.7 36 91.7
Glyma.10G192200 Glycine max HOM05D002303 ORTHO05D006504 8.9e-10 68.6 36 88.9
Glyma.20G198200 Glycine max HOM05D002303 ORTHO05D006504 8.9e-10 68.6 36 88.9
Hma1.2p1_0867F.1_g230190 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 8.9e-10 68.6 36 88.9
Lj5g0024759 Lotus japonicus HOM05D002303 ORTHO05D006504 8.9e-10 68.6 36 88.9
Phvul.007G134200 Phaseolus vulgaris HOM05D002303 ORTHO05D006504 8.9e-10 68.6 36 88.9
vmacro16253 Vaccinium macrocarpon HOM05D002303 ORTHO05D006504 8.9e-10 68.6 36 88.9
ClCG05G025310 Citrullus lanatus HOM05D002303 ORTHO05D006504 1.2e-09 68.2 36 86.1
MELO3C011999.2 Cucumis melo HOM05D002303 ORTHO05D006504 1.2e-09 68.2 36 86.1
CsaV3_5G031590 Cucumis sativus L. HOM05D002303 ORTHO05D006504 1.2e-09 68.2 36 86.1
Lsat_1_v5_gn_9_45920 Lactuca sativa HOM05D002303 ORTHO05D006504 1.2e-09 68.2 36 86.1
PRCOL_00001031 Prasinoderma coloniale HOM05D002303 ORTHO05D006504 1.2e-09 68.2 55 49.1
Lalb_Chr02g0150771 Lupinus albus HOM05D002303 ORTHO05D006504 2.6e-09 67.0 36 86.1
Pp3c5_27650 Physcomitrium patens HOM05D002303 ORTHO05D006504 2.6e-09 67.0 36 86.1
SGA_v2.0_scaffold130G34351 Striga asiatica HOM05D006022 ORTHO05D007649 2.6e-09 67.0 44 77.3
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 3.4e-09 66.6 212 26.9
Sc04g0009110 Simmondsia chinensis HOM05D002303 ORTHO05D006504 4.4e-09 66.2 36 86.1
SGA_v2.0_scaffold136G35036 Striga asiatica HOM05D000942 ORTHO05D405555 1.7e-08 64.3 58 58.6
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 4.9e-08 62.8 55 47.3
Cre04.g226450 Chlamydomonas reinhardtii HOM05D002303 ORTHO05D006504 1.9e-07 60.8 44 54.5
SGA_v2.0_scaffold366G50025 Striga asiatica HOM05D000004 ORTHO05D000002 1.9e-07 60.8 76 47.4
MCO15G060 Micromonas commoda HOM05D002303 ORTHO05D006504 6.0e-06 55.8 44 56.8
Cfa027163 Carpinus fangiana HOM05D002303 ORTHO05D006504 7.8e-06 55.5 54 46.3


User provided reference genes

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