Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 1.0e-143 513.8 356 100.0
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 1.4e-113 413.7 354 85.3
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 9.4e-113 411.0 353 83.9
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 3.6e-112 409.1 354 85.9
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 6.3e-109 398.3 345 85.8
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 2.3e-103 379.8 354 76.6
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 2.4e-100 369.8 348 80.7
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 4.5e-99 365.5 350 78.9
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 9.4e-97 357.8 351 80.1
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.1e-96 356.7 346 79.2
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 2.7e-96 356.3 343 81.0
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 4.7e-96 355.5 349 69.1
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 4.7e-96 355.5 346 78.0
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 4.7e-96 355.5 351 80.1
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 1.4e-95 354.0 348 69.8
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 4.0e-95 352.4 348 74.4
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 5.2e-95 352.1 348 77.3
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.1e-94 350.9 346 78.0
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 1.5e-94 350.5 351 77.5
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 3.3e-94 349.4 347 78.4
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 4.4e-94 349.0 346 78.6
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 7.5e-94 348.2 346 77.5
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 1.3e-93 347.4 354 78.8
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.7e-93 347.1 348 78.4
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 2.2e-93 346.7 351 67.8
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 2.2e-93 346.7 346 77.2
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 2.8e-93 346.3 356 77.5
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 3.7e-93 345.9 346 77.7
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 3.7e-93 345.9 346 77.2
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 4.8e-93 345.5 348 77.0
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 1.4e-92 344.0 349 77.7
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 2.4e-92 343.2 346 78.0
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 3.1e-92 342.8 340 73.2
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 4.1e-92 342.4 340 77.9
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 4.1e-92 342.4 346 76.0
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 5.3e-92 342.0 344 77.9
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 5.3e-92 342.0 349 76.8
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 7.0e-92 341.7 351 76.6
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 4.5e-91 339.0 343 77.3
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 5.9e-91 338.6 349 66.2
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 5.9e-91 338.6 342 77.5
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 7.7e-91 338.2 342 79.8
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 3.8e-90 335.9 343 77.6
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 3.8e-90 335.9 340 77.6
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 3.8e-90 335.9 341 76.8
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 5.0e-90 335.5 380 72.4
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 8.5e-90 334.7 340 77.6
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 2.5e-89 333.2 343 77.0
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 2.5e-89 333.2 350 76.9
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 4.2e-89 332.4 344 74.7
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 5.5e-89 332.0 351 67.2
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 7.2e-89 331.6 355 75.8
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 7.2e-89 331.6 355 75.8
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 1.0e-87 327.8 350 75.4
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 2.3e-87 326.6 348 74.7
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 1.2e-86 324.3 349 74.8
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 1.5e-86 323.9 345 74.2
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 2.0e-86 323.6 347 75.2
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 2.0e-86 323.6 344 74.7
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 3.4e-86 322.8 345 75.4
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 7.5e-86 321.6 341 73.9
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 9.8e-86 321.2 350 75.4
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 1.7e-85 320.5 345 75.1
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 1.7e-85 320.5 346 66.8
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.8e-85 319.7 341 74.2
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 2.8e-85 319.7 343 75.5
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 4.8e-85 318.9 348 64.7
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 1.1e-84 317.8 368 58.7
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 1.1e-84 317.8 350 74.6
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.4e-84 317.4 358 64.2
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 1.8e-84 317.0 346 67.1
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.8e-84 317.0 349 67.9
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.4e-84 316.6 348 64.7
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.1e-84 316.2 348 64.4
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 1.2e-83 314.3 350 75.4
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.2e-83 314.3 351 62.7
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 3.5e-83 312.8 324 73.8
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 5.9e-83 312.0 353 45.6
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.0e-82 308.9 328 75.9
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 6.5e-82 308.5 347 74.1
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 8.5e-82 308.1 350 74.0
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 8.5e-82 308.1 351 69.5
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 1.5e-81 307.4 343 73.5
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 1.5e-81 307.4 345 65.8
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 2.5e-81 306.6 341 72.4
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.4e-79 300.8 350 72.3
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 1.8e-79 300.4 350 71.7
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.8e-79 300.4 348 63.5
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 1.8e-79 300.4 353 62.9
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 4.0e-79 299.3 354 72.9
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 5.2e-79 298.9 350 72.3
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 6.8e-79 298.5 341 50.1
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.3e-77 294.3 349 72.5
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 1.3e-74 284.3 350 70.3
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 1.7e-74 283.9 347 62.0
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 6.6e-74 282.0 479 56.8
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 2.4e-68 263.5 276 82.6
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 3.2e-68 263.1 351 64.4
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 7.0e-68 261.9 276 77.2
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 1.6e-67 260.8 350 69.1
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.2e-64 251.1 319 72.1
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 1.6e-64 250.8 345 59.7
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 2.8e-64 250.0 276 81.9
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 1.0e-63 248.1 340 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 4.9e-61 239.2 344 56.1
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 1.1e-60 238.0 346 52.3
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 1.9e-60 237.3 255 85.1
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 1.0e-58 231.5 380 52.9
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 1.7e-58 230.7 286 44.1
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 3.0e-58 229.9 357 63.3
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 1.5e-57 227.6 348 65.5
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 5.6e-57 225.7 349 55.3
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 9.5e-57 224.9 349 55.6
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 9.5e-57 224.9 349 55.6
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 1.2e-56 224.6 349 55.3
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 1.6e-56 224.2 358 38.5
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 7.8e-51 205.3 279 59.1
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 1.5e-49 201.1 358 47.8
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 2.3e-47 193.7 363 49.3
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 2.3e-47 193.7 358 48.0
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 3.2e-44 183.3 114 71.1
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 2.7e-43 180.3 112 68.8
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 1.1e-41 174.9 345 51.3
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 1.9e-41 174.1 308 56.8
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 9.6e-41 171.8 115 69.6
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 1.6e-40 171.0 105 76.2
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 1.8e-39 167.5 295 66.4
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 7.6e-38 162.2 104 69.2
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 1.2e-35 154.8 112 62.5
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 5.6e-33 146.0 103 70.9
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 1.7e-29 134.4 349 34.1
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 2.2e-29 134.0 73 78.1
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 6.4e-29 132.5 105 56.2
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.2e-27 128.3 89 67.4
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 1.0e-26 125.2 472 36.2
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 1.7e-21 107.8 269 66.2
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 7.1e-20 102.4 361 30.2
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-18 96.7 57 75.4
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 1.1e-17 95.1 103 45.6
AagrBONN_evm.TU.Sc2ySwM_344.3396 Anthoceros agrestis HOM05D004768 ORTHO05D005812 2.5e-17 94.0 157 36.3
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 5.6e-17 92.8 107 50.5
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.3e-16 91.7 75 58.7
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 6.9e-15 85.9 101 49.5
MCO12G400 Micromonas commoda HOM05D004768 ORTHO05D005812 1.0e-13 82.0 338 42.9
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 1.7e-13 81.3 51 70.6
CBR_g39931 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-13 80.9 119 40.3
Oeu009219.1 Olea europaea HOM05D004768 ORTHO05D005812 4.9e-13 79.7 132 65.9
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 2.5e-12 77.4 47 76.6
SalBow1G3573 Salvia bowleyana HOM05D004768 ORTHO05D005812 3.2e-12 77.0 78 51.3
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 1.8e-10 71.2 168 52.4
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 2.3e-10 70.9 35 85.7
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 1.9e-09 67.8 48 66.7
PRCOL_00001375 Prasinoderma coloniale HOM05D004768 ORTHO05D005812 2.8e-08 63.9 113 34.5
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 8.2e-08 62.4 118 39.0
Hund05323 Selenicereus undatus HOM05D002634 ORTHO05D003100 6.9e-07 59.3 118 39.0
RcHm_v2.0_Chr2g0170031 Rosa chinensis HOM05D002410 ORTHO05D002805 9.0e-07 58.9 100 40.0
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 1.2e-06 58.5 118 34.7
BcaC04g23207 Brassica carinata HOM05D002634 ORTHO05D003100 1.5e-06 58.2 115 33.9
C09p11120 Brassica napus HOM05D002634 ORTHO05D003100 1.5e-06 58.2 115 33.9
BolC9t54001H Brassica oleracea HOM05D002634 ORTHO05D003100 1.5e-06 58.2 115 33.9
Cre05.g236250 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D141580 1.5e-06 58.2 120 32.5
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 2.0e-06 57.8 109 31.2
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.0e-06 57.8 125 33.6
Hma1.2p1_0240F.1_g100120 Hydrangea macrophylla HOM05D002634 ORTHO05D003100 2.6e-06 57.4 116 33.6
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.6e-06 57.4 121 33.1
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.6e-06 57.4 121 33.9
Cre04.g222000 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 3.4e-06 57.0 134 33.6
Glyma.04G043300 Glycine max HOM05D002634 ORTHO05D003100 3.4e-06 57.0 123 33.3
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 4.5e-06 56.6 114 36.0
Ciclev10025285m.g Citrus clementina HOM05D002634 ORTHO05D003100 4.5e-06 56.6 128 34.4
ECA247G2795 Erigeron canadensis HOM05D002634 ORTHO05D003100 4.5e-06 56.6 118 37.3
Aqoxy5G01132 Aquilegia oxysepala HOM05D002634 ORTHO05D003100 5.9e-06 56.2 118 39.0
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 5.9e-06 56.2 103 38.8
Cfa022323 Carpinus fangiana HOM05D002568 ORTHO05D125017 5.9e-06 56.2 124 33.9
Dinv35913 Davidia involucrata HOM05D002634 ORTHO05D003100 5.9e-06 56.2 118 35.6
Rhsim06G0058000 Rhododendron simsii HOM05D002634 ORTHO05D003100 5.9e-06 56.2 117 34.2
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 5.9e-06 56.2 116 31.9
vmacro21472 Vaccinium macrocarpon HOM05D002634 ORTHO05D003100 5.9e-06 56.2 117 34.2
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 7.6e-06 55.8 109 33.0
DCAR_012802 Daucus carota HOM05D002634 ORTHO05D003100 7.6e-06 55.8 116 32.8
Lalb_Chr08g0245421 Lupinus albus HOM05D002634 ORTHO05D003100 7.6e-06 55.8 118 35.6
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 7.6e-06 55.8 121 33.1
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 1.0e-05 55.5 104 33.7
Cc10_g05270 Coffea canephora HOM05D002634 ORTHO05D003100 1.0e-05 55.5 118 34.7
Haze_26356 Corylus avellana HOM05D002410 ORTHO05D002805 1.0e-05 55.5 108 29.6
Eucgr.J03040 Eucalyptus grandis HOM05D004669 ORTHO05D005767 1.0e-05 55.5 104 33.7
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.0e-05 55.5 109 33.9


User provided reference genes

Program Settings