Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07757 Striga asiatica HOM05D003480 ORTHO05D004425 2.4e-56 221.9 108 100.0
SGA_v2.0_scaffold49G18296 Striga asiatica HOM05D003480 ORTHO05D004425 3.6e-31 138.3 137 59.1
SGA_v2.0_scaffold159G37637 Striga asiatica HOM05D003480 ORTHO05D004425 4.6e-31 137.9 137 59.1
Migut.M01135 Erythranthe guttata HOM05D003480 ORTHO05D004425 3.9e-30 134.8 140 55.0
Migut.H01483 Erythranthe guttata HOM05D003480 ORTHO05D004425 5.1e-30 134.4 140 55.7
MSTRG.15878 Avicennia marina HOM05D003480 ORTHO05D004425 2.8e-28 128.6 140 53.6
Ciclev10017475m.g Citrus clementina HOM05D003480 ORTHO05D004425 4.8e-28 127.9 140 52.9
Psat3g013320 Pisum sativum HOM05D003480 ORTHO05D004425 4.8e-28 127.9 140 52.1
QL06p052924 Quercus lobata HOM05D003480 ORTHO05D004425 4.8e-28 127.9 140 52.9
QL06p053406 Quercus lobata HOM05D003480 ORTHO05D004425 4.8e-28 127.9 140 52.9
CiPaw.09G060800 Carya illinoinensis HOM05D003480 ORTHO05D004425 1.8e-27 125.9 140 52.1
Lj6g0027126 Lotus japonicus HOM05D003480 ORTHO05D004425 1.8e-27 125.9 140 52.1
unitig_22.g5701 Utricularia gibba HOM05D003480 ORTHO05D004425 1.8e-27 125.9 140 52.9
vmacro03877 Vaccinium macrocarpon HOM05D003480 ORTHO05D004425 1.8e-27 125.9 140 52.1
AUR62015260 Chenopodium quinoa HOM05D003480 ORTHO05D004425 2.4e-27 125.6 140 51.4
AUR62018061 Chenopodium quinoa HOM05D003480 ORTHO05D004425 2.4e-27 125.6 140 51.4
AUR62036107 Chenopodium quinoa HOM05D003480 ORTHO05D004425 2.4e-27 125.6 140 51.4
Nitab4.5_0009438g0010 Nicotiana tabacum HOM05D003480 ORTHO05D004425 2.4e-27 125.6 140 51.4
Nitab4.5_0011879g0010 Nicotiana tabacum HOM05D003480 ORTHO05D004425 2.4e-27 125.6 140 51.4
TPR.G1669 Trifolium pratense HOM05D003480 ORTHO05D004425 2.4e-27 125.6 140 50.7
Gohir.A06G128300 Gossypium hirsutum HOM05D003480 ORTHO05D004425 4.1e-27 124.8 140 50.7
Gohir.A10G026600 Gossypium hirsutum HOM05D003480 ORTHO05D004425 4.1e-27 124.8 140 51.4
Gohir.D10G027200 Gossypium hirsutum HOM05D003480 ORTHO05D004425 4.1e-27 124.8 140 51.4
Gorai.010G154200 Gossypium raimondii HOM05D003480 ORTHO05D004425 4.1e-27 124.8 140 50.7
Hma1.2p1_0673F.1_g201280 Hydrangea macrophylla HOM05D003480 ORTHO05D004425 4.1e-27 124.8 140 53.6
Hma1.2p1_1222F.1_g268180 Hydrangea macrophylla HOM05D003480 ORTHO05D004425 4.1e-27 124.8 140 53.6
Lalb_Chr20g0121821 Lupinus albus HOM05D003480 ORTHO05D004425 4.1e-27 124.8 140 51.4
Rhsim13G0138500 Rhododendron simsii HOM05D003480 ORTHO05D004425 4.1e-27 124.8 140 51.4
arahy.Tifrunner.gnm1.ann1.FXY2MK Arachis hypogaea HOM05D003480 ORTHO05D004425 5.3e-27 124.4 140 51.4
arahy.Tifrunner.gnm1.ann1.R134T8 Arachis hypogaea HOM05D003480 ORTHO05D004425 5.3e-27 124.4 140 51.4
TPR.G16497 Trifolium pratense HOM05D003480 ORTHO05D004425 5.3e-27 124.4 140 50.7
CiPaw.10G049800 Carya illinoinensis HOM05D003480 ORTHO05D004425 6.9e-27 124.0 140 51.4
Dinv17321 Davidia involucrata HOM05D003480 ORTHO05D004425 6.9e-27 124.0 140 51.4
Hund23769 Selenicereus undatus HOM05D003480 ORTHO05D004425 6.9e-27 124.0 140 50.7
Solyc02g078120.2 Solanum lycopersicum HOM05D003480 ORTHO05D004425 6.9e-27 124.0 140 51.4
Sopen02g022950 Solanum pennellii HOM05D003480 ORTHO05D004425 6.9e-27 124.0 140 51.4
PGSC0003DMG400029694 Solanum tuberosum HOM05D003480 ORTHO05D004425 6.9e-27 124.0 140 51.4
unitig_8.g3643 Utricularia gibba HOM05D003480 ORTHO05D004425 6.9e-27 124.0 140 52.1
VMungo0540G0515 Vigna mungo HOM05D003480 ORTHO05D004425 6.9e-27 124.0 140 51.4
BcaC04g21840 Brassica carinata HOM05D003480 ORTHO05D004425 9.1e-27 123.6 129 54.3
AUR62019528 Chenopodium quinoa HOM05D003480 ORTHO05D004425 9.1e-27 123.6 140 50.7
Psat1g204440 Pisum sativum HOM05D003480 ORTHO05D004425 9.1e-27 123.6 140 50.7
Glyma.13G238200 Glycine max HOM05D003480 ORTHO05D004425 1.2e-26 123.2 140 51.4
Glyma.15G075100 Glycine max HOM05D003480 ORTHO05D004425 1.2e-26 123.2 140 51.4
Atru.chr10.1865 Acer truncatum HOM05D003480 ORTHO05D004425 1.5e-26 122.9 140 51.4
DCAR_024898 Daucus carota HOM05D003480 ORTHO05D004425 1.5e-26 122.9 140 50.0
Medtr7g111950 Medicago truncatula HOM05D003480 ORTHO05D004425 1.5e-26 122.9 140 50.7
Thecc.06G186000 Theobroma cacao HOM05D003480 ORTHO05D004425 1.5e-26 122.9 140 50.7
CAN.G529.1 Capsicum annuum HOM05D003480 ORTHO05D004425 2.0e-26 122.5 140 50.7
ClCG01G025340 Citrullus lanatus HOM05D003480 ORTHO05D004425 2.0e-26 122.5 140 50.7
CsaV3_6G052600 Cucumis sativus L. HOM05D003480 ORTHO05D004425 2.0e-26 122.5 140 50.7
Dinv40570 Davidia involucrata HOM05D003480 ORTHO05D004425 2.0e-26 122.5 140 50.0
Thhalv10003390m.g Eutrema salsugineum HOM05D003480 ORTHO05D004425 2.0e-26 122.5 140 50.0
Lalb_Chr15g0089781 Lupinus albus HOM05D003480 ORTHO05D004425 2.0e-26 122.5 140 50.7
Sed0021745 Sechium edule HOM05D003480 ORTHO05D004425 2.0e-26 122.5 140 50.7
Actinidia05643 Actinidia chinensis HOM05D003480 ORTHO05D004425 2.6e-26 122.1 140 50.7
Gorai.011G028500 Gossypium raimondii HOM05D003480 ORTHO05D004425 2.6e-26 122.1 140 50.7
Peaxi162Scf00048g00153 Petunia axillaris HOM05D003480 ORTHO05D004425 2.6e-26 122.1 140 50.0
Phvul.006G184500 Phaseolus vulgaris HOM05D003480 ORTHO05D004425 2.6e-26 122.1 140 50.0
AT4G20980 Arabidopsis thaliana HOM05D003480 ORTHO05D004425 3.4e-26 121.7 140 50.7
CAN.G413.27 Capsicum annuum HOM05D003480 ORTHO05D004425 4.5e-26 121.3 140 50.7
CARHR178810 Cardamine hirsuta HOM05D003480 ORTHO05D004425 4.5e-26 121.3 140 50.7
Cpa.g.sc27.36 Carica papaya HOM05D003480 ORTHO05D004425 4.5e-26 121.3 140 50.0
Ca_00342_v3 Cicer arietinum L. HOM05D003480 ORTHO05D004425 4.5e-26 121.3 140 50.0
Duzib192G0865 Durio zibethinus HOM05D003480 ORTHO05D004425 4.5e-26 121.3 140 50.0
TWI38G1181 Tripterygium wilfordii HOM05D003480 ORTHO05D004425 4.5e-26 121.3 140 50.0
AT5G44320 Arabidopsis thaliana HOM05D003480 ORTHO05D004425 5.9e-26 120.9 140 50.7
Carub.0008s0415 Capsella rubella HOM05D003480 ORTHO05D004425 5.9e-26 120.9 140 49.3
Duzib235G0380 Durio zibethinus HOM05D003480 ORTHO05D004425 5.9e-26 120.9 140 50.0
Gohir.A05G161200 Gossypium hirsutum HOM05D003480 ORTHO05D004425 5.9e-26 120.9 140 50.0
Gohir.D05G163900 Gossypium hirsutum HOM05D003480 ORTHO05D004425 5.9e-26 120.9 140 50.0
Gorai.009G169000 Gossypium raimondii HOM05D003480 ORTHO05D004425 5.9e-26 120.9 140 50.0
Sed0013036 Sechium edule HOM05D003480 ORTHO05D004425 5.9e-26 120.9 140 50.0
TWI38G1399 Tripterygium wilfordii HOM05D003480 ORTHO05D004425 5.9e-26 120.9 140 50.0
Potri.011G053500 Populus trichocarpa HOM05D003480 ORTHO05D004425 7.7e-26 120.6 140 50.0
CSS0021711 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D004425 1.0e-25 120.2 140 50.7
Eucgr.D00614 Eucalyptus grandis HOM05D003480 ORTHO05D004425 1.0e-25 120.2 140 50.0
MD05G1338100 Malus domestica HOM05D003480 ORTHO05D004425 1.0e-25 120.2 140 50.0
Potri.004G044500 Populus trichocarpa HOM05D003480 ORTHO05D004425 1.0e-25 120.2 140 50.0
Prupe.4G048700 Prunus persica HOM05D003480 ORTHO05D004425 1.0e-25 120.2 140 50.0
Sabra04G0027700 Salix brachista HOM05D003480 ORTHO05D004425 1.0e-25 120.2 140 50.0
CSS0026003 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D004425 1.3e-25 119.8 130 53.1
Sp2g09160 Schrenkiella parvula HOM05D003480 ORTHO05D004425 1.3e-25 119.8 140 50.0
Sp7g19050 Schrenkiella parvula HOM05D003480 ORTHO05D004425 1.3e-25 119.8 140 49.3
Aa31LG6G3040 Aethionema arabicum HOM05D003480 ORTHO05D004425 1.7e-25 119.4 140 49.3
AL8G15580 Arabidopsis lyrata HOM05D003480 ORTHO05D004425 1.7e-25 119.4 140 50.0
BcaB07g30957 Brassica carinata HOM05D003480 ORTHO05D004425 1.7e-25 119.4 140 50.0
A09p21050 Brassica napus HOM05D003480 ORTHO05D004425 1.7e-25 119.4 140 50.0
C09p26790 Brassica napus HOM05D003480 ORTHO05D004425 1.7e-25 119.4 140 50.0
Ah.12g058540 Amaranthus hybridus HOM05D003480 ORTHO05D004425 2.2e-25 119.0 140 47.9
BraA09t37704Z Brassica rapa HOM05D003480 ORTHO05D004425 2.2e-25 119.0 140 50.0
FAN21G3883 Fragaria x ananassa HOM05D003480 ORTHO05D004425 2.2e-25 119.0 137 51.1
Manes.11G028400 Manihot esculenta HOM05D003480 ORTHO05D004425 2.2e-25 119.0 140 49.3
PGR042G2561 Punica granatum HOM05D003480 ORTHO05D004425 2.2e-25 119.0 140 50.0
AL7G33170 Arabidopsis lyrata HOM05D003480 ORTHO05D004425 3.8e-25 118.2 140 49.3
BcaC06g31627 Brassica carinata HOM05D003480 ORTHO05D004425 3.8e-25 118.2 140 49.3
C07p27040 Brassica napus HOM05D003480 ORTHO05D004425 3.8e-25 118.2 140 49.3
Cfa014799 Carpinus fangiana HOM05D003480 ORTHO05D004425 3.8e-25 118.2 137 50.4
Haze_06432 Corylus avellana HOM05D003480 ORTHO05D004425 3.8e-25 118.2 137 50.4
A06p47300 Brassica napus HOM05D003480 ORTHO05D004425 5.0e-25 117.9 140 49.3
BraA06t27601Z Brassica rapa HOM05D003480 ORTHO05D004425 5.0e-25 117.9 140 49.3
Lj1A1204T32 Lonicera japonica HOM05D003480 ORTHO05D004425 5.0e-25 117.9 140 49.3
EL10Ac8g19153 Beta vulgaris HOM05D003480 ORTHO05D004425 6.5e-25 117.5 140 48.6
Carub.0007s2046 Capsella rubella HOM05D003480 ORTHO05D004425 6.5e-25 117.5 140 49.3
FvH4_3g37950 Fragaria vesca HOM05D003480 ORTHO05D004425 6.5e-25 117.5 137 50.4
FAN11G2816 Fragaria x ananassa HOM05D003480 ORTHO05D004425 6.5e-25 117.5 137 50.4
RcHm_v2.0_Chr5g0048541 Rosa chinensis HOM05D003480 ORTHO05D004425 6.5e-25 117.5 140 49.3
BcaC06g31628 Brassica carinata HOM05D003480 ORTHO05D004425 8.5e-25 117.1 140 48.6
BolC7t43234H Brassica oleracea HOM05D003480 ORTHO05D004425 8.5e-25 117.1 140 48.6
BolC9t55567H Brassica oleracea HOM05D003480 ORTHO05D004425 8.5e-25 117.1 140 49.3
THA.LOC104812284 Tarenaya hassleriana HOM05D003480 ORTHO05D004425 8.5e-25 117.1 140 47.9
Sabra11G0037300 Salix brachista HOM05D003480 ORTHO05D004425 1.1e-24 116.7 140 49.3
FvH4_5g27490 Fragaria vesca HOM05D003480 ORTHO05D004425 1.4e-24 116.3 137 50.4
FAN08G1211 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.4e-24 116.3 137 50.4
FAN13G0993 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.4e-24 116.3 137 50.4
FAN18G0389 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.4e-24 116.3 137 50.4
COL.COLO4_31457 Corchorus olitorius HOM05D003480 ORTHO05D004425 1.9e-24 115.9 140 47.9
FAN04G1437 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.9e-24 115.9 137 49.6
Nn1g04114 Nelumbo nucifera HOM05D003480 ORTHO05D004425 1.9e-24 115.9 140 49.3
BcaB07g30952 Brassica carinata HOM05D003480 ORTHO05D004425 2.5e-24 115.5 140 48.6
BcaC06g34569 Brassica carinata HOM05D003480 ORTHO05D004425 2.5e-24 115.5 140 48.6
vmacro03873 Vaccinium macrocarpon HOM05D003480 ORTHO05D004425 2.5e-24 115.5 69 81.2
FAN16G2584 Fragaria x ananassa HOM05D003480 ORTHO05D004425 4.2e-24 114.8 137 48.9
HanXRQChr01g0003861 Helianthus annuus HOM05D003480 ORTHO05D004425 4.2e-24 114.8 140 47.9
Lsat_1_v5_gn_1_126340 Lactuca sativa HOM05D003480 ORTHO05D004425 4.2e-24 114.8 140 47.9
Nn1g06510 Nelumbo nucifera HOM05D003480 ORTHO05D004425 5.5e-24 114.4 140 48.6
Actinidia16555 Actinidia chinensis HOM05D003480 ORTHO05D004425 2.1e-23 112.5 103 59.2
ATR0665G315 Amborella trichopoda HOM05D003480 ORTHO05D004425 2.1e-23 112.5 140 47.9
Sc17g0006150 Simmondsia chinensis HOM05D003480 ORTHO05D004425 2.7e-23 112.1 140 48.6
CDE06G2702 Ceratophyllum demersum HOM05D003480 ORTHO05D004425 3.6e-23 111.7 140 46.4
Gohir.D06G132300 Gossypium hirsutum HOM05D003480 ORTHO05D004425 3.6e-23 111.7 126 49.2
MBI10_g03527_MAGBIO Magnolia biondii HOM05D003480 ORTHO05D004425 3.6e-23 111.7 140 47.9
Manes.04G137900 Manihot esculenta HOM05D003480 ORTHO05D004425 6.1e-23 110.9 140 47.1
HanXRQChr16g0516221 Helianthus annuus HOM05D003480 ORTHO05D004425 7.9e-23 110.5 140 44.3
THA.LOC104812939 Tarenaya hassleriana HOM05D003480 ORTHO05D004425 7.9e-23 110.5 140 46.4
ATR0665G336 Amborella trichopoda HOM05D003480 ORTHO05D004425 1.0e-22 110.2 140 47.1
Aqoxy4G02656 Aquilegia oxysepala HOM05D003480 ORTHO05D004425 1.4e-22 109.8 140 46.4
CANSAT35G1561 Cannabis sativa HOM05D003480 ORTHO05D004425 1.4e-22 109.8 140 47.9
ECA248G3601 Erigeron canadensis HOM05D003480 ORTHO05D004425 1.4e-22 109.8 140 45.7
SHI13762 Sapria himalayana HOM05D003480 ORTHO05D004425 1.8e-22 109.4 140 45.0
TAR626G0815 Trochodendron aralioides HOM05D003480 ORTHO05D004425 1.8e-22 109.4 140 46.4
CARHR227530 Cardamine hirsuta HOM05D003480 ORTHO05D004425 8.8e-22 107.1 94 58.5
SEGI_12249 Sequoiadendron giganteum HOM05D003480 ORTHO05D004425 1.1e-21 106.7 140 45.7
PSO541G6261 Papaver somniferum HOM05D003480 ORTHO05D004425 2.6e-21 105.5 140 44.3
PSO675G1395 Papaver somniferum HOM05D003480 ORTHO05D004425 2.6e-21 105.5 140 44.3
C02p44940 Brassica napus HOM05D003480 ORTHO05D004425 4.4e-21 104.8 98 56.1
TAR627G1095 Trochodendron aralioides HOM05D003480 ORTHO05D004425 1.7e-20 102.8 132 45.5
CDE07G0331 Ceratophyllum demersum HOM05D003480 ORTHO05D004425 1.1e-19 100.1 69 69.6
SMO169G0124 Selaginella moellendorffii HOM05D003480 ORTHO05D004425 1.8e-19 99.4 140 43.6
SMO298G0032 Selaginella moellendorffii HOM05D003480 ORTHO05D004425 1.8e-19 99.4 140 43.6
PSO210G2017 Papaver somniferum HOM05D003480 ORTHO05D004425 5.3e-19 97.8 69 65.2
Pp3c3_3440 Physcomitrium patens HOM05D003480 ORTHO05D004425 6.9e-19 97.4 140 42.1
PSO210G2817 Papaver somniferum HOM05D003480 ORTHO05D004425 1.5e-18 96.3 69 65.2
Pp3c13_8400 Physcomitrium patens HOM05D003480 ORTHO05D004425 4.5e-18 94.7 69 65.2
Zm00001eb157540 Zea mays HOM05D003480 ORTHO05D004425 1.7e-17 92.8 141 41.8
Zm00001eb296070 Zea mays HOM05D003480 ORTHO05D004425 1.7e-17 92.8 141 41.1
AagrBONN_evm.TU.Sc2ySwM_117.1925 Anthoceros agrestis HOM05D003480 ORTHO05D004425 2.2e-17 92.4 140 39.3
Pp3c12_8550 Physcomitrium patens HOM05D003480 ORTHO05D004425 2.2e-17 92.4 140 39.3
Os05g0566500 Oryza sativa ssp. japonica HOM05D003480 ORTHO05D004425 3.8e-17 91.7 141 41.8
Mapoly0112s0008 Marchantia polymorpha HOM05D003480 ORTHO05D004425 8.5e-17 90.5 140 38.6
CBR_g20021 Chara braunii HOM05D003480 ORTHO05D004425 3.2e-16 88.6 140 40.7
CBR_g8049 Chara braunii HOM05D003480 ORTHO05D004425 4.7e-15 84.7 140 38.6
MCO16G041 Micromonas commoda HOM05D003480 ORTHO05D004425 2.6e-10 68.9 139 30.9
PRCOL_00004325 Prasinoderma coloniale HOM05D003480 ORTHO05D004425 1.6e-07 59.7 69 42.0
TAR375G0365 Trochodendron aralioides HOM05D003480 ORTHO05D004425 3.6e-07 58.5 141 32.6


User provided reference genes

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