Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 0.0e+00 1432.5 710 100.0
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 0.0e+00 1182.9 708 81.4
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 0.0e+00 1172.1 712 80.9
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 0.0e+00 1124.4 718 77.0
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 7.2e-298 1026.9 720 70.6
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.6e-297 1025.8 720 70.6
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 6.1e-297 1023.8 723 70.4
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.1e-293 1011.5 724 69.8
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 7.7e-292 1006.9 722 68.7
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 2.5e-290 1001.9 713 69.1
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 9.4e-290 1000.0 724 68.0
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.0e-288 996.5 722 67.6
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 6.7e-288 993.8 727 68.4
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 4.4e-287 991.1 722 67.5
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 2.2e-286 988.8 719 68.4
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 2.8e-286 988.4 714 66.7
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 8.2e-286 986.9 727 67.0
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.4e-285 986.1 724 67.7
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 1.8e-285 985.7 724 67.5
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.0e-283 979.9 711 66.5
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.3e-283 979.5 721 68.0
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 2.9e-283 978.4 721 67.1
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 5.0e-283 977.6 727 66.3
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 4.7e-281 971.1 721 67.1
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 5.2e-280 967.6 721 66.7
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 8.8e-280 966.8 714 67.6
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 2.6e-279 965.3 718 66.4
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 4.4e-279 964.5 718 66.4
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.8e-277 959.1 724 66.4
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 1.6e-276 956.1 720 65.8
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.6e-276 956.1 736 64.4
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 4.5e-276 954.5 728 65.1
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 2.2e-275 952.2 721 65.3
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 9.5e-274 946.8 721 65.5
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.6e-273 946.0 721 65.6
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 1.0e-272 943.3 719 64.4
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.6e-271 938.7 720 64.2
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 2.6e-271 938.7 725 64.7
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.4e-271 938.3 729 64.2
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 7.5e-271 937.2 703 65.4
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.7e-270 936.0 650 69.7
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 2.2e-270 935.6 704 64.3
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 1.8e-269 932.6 721 64.5
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 4.1e-269 931.4 723 62.4
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.2e-268 929.9 729 63.4
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 1.2e-268 929.9 724 63.8
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 2.0e-268 929.1 687 64.8
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 4.5e-268 927.9 721 64.1
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 1.9e-266 922.5 716 63.0
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 4.3e-266 921.4 689 65.0
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 5.6e-266 921.0 707 66.2
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 9.5e-266 920.2 691 65.4
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 9.5e-266 920.2 713 63.3
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 2.8e-265 918.7 722 62.0
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 4.0e-264 914.8 629 70.4
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 8.9e-264 913.7 723 61.8
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 2.0e-263 912.5 723 61.8
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 4.4e-263 911.4 724 62.2
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 5.7e-263 911.0 720 62.2
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.3e-262 909.8 706 62.7
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 2.4e-261 905.6 720 61.9
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 4.1e-261 904.8 721 61.6
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 4.1e-261 904.8 721 61.3
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 9.2e-261 903.7 720 61.8
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 2.0e-260 902.5 719 61.8
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 3.5e-260 901.7 706 62.0
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 3.9e-259 898.3 663 66.4
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.9e-258 896.0 721 61.0
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 2.6e-255 885.6 731 62.0
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 7.5e-255 884.0 734 60.5
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 2.9e-254 882.1 723 60.7
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 4.9e-254 881.3 729 62.4
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 8.3e-254 880.6 725 61.7
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.6e-249 866.3 701 61.8
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.1e-248 863.6 723 59.8
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 5.2e-248 861.3 731 58.8
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 2.4e-245 852.4 542 75.3
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 4.1e-245 851.7 648 64.4
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 9.2e-245 850.5 629 65.5
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 2.7e-244 849.0 721 58.5
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 7.8e-244 847.4 726 58.3
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.3e-243 846.7 986 49.6
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 1.1e-242 843.6 589 68.6
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 5.6e-242 841.3 711 62.0
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 2.8e-241 839.0 733 57.0
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 6.2e-241 837.8 589 66.6
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 4.9e-238 828.2 730 57.5
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 4.1e-237 825.1 656 62.3
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 5.6e-234 814.7 589 68.4
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 4.0e-232 808.5 732 54.8
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 5.8e-231 804.7 726 55.2
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.2e-228 797.0 718 56.8
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 6.0e-228 794.7 872 49.1
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.8e-224 783.1 562 65.7
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 3.9e-211 738.8 473 74.8
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.2e-206 723.0 980 45.6
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 7.9e-204 714.5 722 53.7
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 3.4e-183 646.0 453 68.7
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 5.2e-163 578.9 747 42.4
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 3.7e-153 546.2 683 42.2
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 7.5e-146 521.9 363 68.3
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 4.9e-145 519.2 628 44.1
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.9e-128 464.2 442 55.0
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 5.1e-126 456.1 382 59.4
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.2e-124 451.4 260 87.7
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 1.6e-100 371.3 286 61.2
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 7.1e-88 329.3 291 59.5
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 6.7e-86 322.8 226 69.5
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 4.2e-80 303.5 283 56.9
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 5.7e-77 293.1 245 59.2
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.2e-64 250.8 167 74.9
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 2.2e-57 228.0 149 66.4
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.1e-43 181.0 237 41.8
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.3e-38 164.9 222 41.9
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.4e-37 161.0 237 38.8
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 1.0e-33 149.4 155 51.0
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 8.3e-28 129.8 155 42.6
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-27 127.5 160 41.2
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 7.0e-27 126.7 112 53.6
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.1e-24 119.4 106 58.5
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 9.5e-24 116.3 97 56.7
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 3.6e-23 114.4 87 59.8
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 6.2e-23 113.6 82 63.4
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 8.9e-22 109.8 82 62.2
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 2.0e-21 108.6 121 50.4
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 4.9e-20 104.0 109 47.7
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 1.1e-19 102.8 99 51.5
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.6e-18 99.0 69 69.6
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 7.8e-18 96.7 109 45.9
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-17 95.9 72 63.9
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.3e-17 95.9 114 48.2
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 2.3e-17 95.1 109 45.0
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 3.9e-17 94.4 130 46.9
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 7.3e-16 90.1 74 63.5
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 3.6e-15 87.8 66 62.1
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 3.6e-15 87.8 61 65.6
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.4e-14 85.9 165 34.5
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 1.2e-13 82.8 64 56.2
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 3.4e-13 81.3 65 63.1
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 9.9e-13 79.7 55 72.7
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-12 78.6 108 38.9
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 8.3e-12 76.6 54 64.8
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.9e-11 75.5 48 72.9
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 4.1e-11 74.3 57 59.6
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 7.1e-11 73.6 57 59.6
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 7.1e-11 73.6 57 59.6
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 7.1e-11 73.6 129 35.7
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 4.6e-10 70.9 57 57.9
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.1e-08 66.2 74 50.0
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 9.5e-08 63.2 45 66.7
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.4e-06 59.3 35 71.4


User provided reference genes

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