Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 0.0e+00 1602.4 972 100.0
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 5.7e-229 798.5 1009 57.4
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.1e-227 794.3 976 59.6
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 8.5e-217 758.1 758 68.3
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.8e-182 644.0 802 57.5
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.2e-181 641.3 940 55.0
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 7.5e-181 638.6 1013 53.1
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 6.4e-180 635.6 1013 52.4
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.5e-176 624.4 957 52.4
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 5.6e-176 622.5 893 55.0
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 7.3e-176 622.1 1014 50.4
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 4.9e-172 609.4 854 57.4
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 6.4e-172 609.0 1023 52.1
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 7.1e-171 605.5 812 57.1
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 3.5e-170 603.2 1009 51.5
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 3.9e-169 599.7 915 51.8
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 6.6e-169 599.0 825 58.1
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 1.2e-167 594.7 965 51.5
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.6e-167 594.3 933 50.9
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 2.9e-164 583.6 919 50.5
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 4.9e-164 582.8 938 51.5
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.2e-163 579.7 947 52.2
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.3e-161 574.7 944 51.1
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.5e-160 571.2 783 59.5
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.5e-160 570.5 927 50.5
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.8e-159 567.0 943 50.8
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.8e-158 564.3 936 51.1
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 9.0e-158 562.0 954 49.4
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 1.2e-157 561.6 941 51.0
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 9.9e-157 558.5 924 50.3
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 1.3e-156 558.1 953 51.5
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.9e-156 557.0 913 50.4
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.4e-155 554.7 939 49.8
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 2.4e-155 553.9 937 50.2
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 7.1e-155 552.4 955 49.9
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.2e-154 551.6 907 53.1
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.6e-154 551.2 786 53.8
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 4.6e-154 549.7 949 47.3
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 7.9e-154 548.9 947 49.5
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.0e-153 548.5 997 47.8
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.7e-153 547.7 906 45.0
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.5e-152 544.7 794 55.8
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.6e-152 542.7 936 50.1
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 5.6e-152 542.7 793 54.1
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 7.4e-152 542.3 794 51.5
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 7.4e-152 542.3 795 54.0
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 7.4e-152 542.3 998 48.4
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.3e-151 541.6 787 55.7
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.8e-150 537.7 1011 43.1
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.1e-150 537.0 936 50.1
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 6.9e-150 535.8 904 51.8
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 9.0e-150 535.4 950 48.8
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.2e-149 535.0 763 55.4
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 5.8e-149 532.7 955 47.7
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.4e-147 528.1 993 46.9
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 7.9e-146 522.3 818 49.4
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.8e-145 521.2 970 47.7
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 3.0e-145 520.4 946 48.4
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.1e-144 518.5 1053 45.9
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 7.4e-144 515.8 803 51.2
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 7.4e-144 515.8 794 52.1
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 1.3e-143 515.0 992 46.7
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 5.8e-141 506.1 781 53.4
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 3.8e-140 503.4 1006 48.7
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 4.9e-140 503.1 786 53.1
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 6.5e-140 502.7 793 52.5
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 3.2e-139 500.4 938 47.3
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 4.2e-139 500.0 804 50.0
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 6.0e-138 496.1 929 46.1
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 3.0e-137 493.8 942 47.7
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.5e-136 491.5 786 52.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.3e-135 488.4 929 44.7
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.3e-135 488.4 946 47.4
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 3.7e-135 486.9 939 45.5
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 3.7e-135 486.9 791 50.3
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 1.4e-134 485.0 779 50.6
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 6.9e-134 482.6 786 50.6
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 6.9e-134 482.6 956 45.3
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.3e-132 478.4 787 49.9
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 1.3e-132 478.4 926 49.4
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 3.8e-132 476.9 793 51.8
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.2e-131 473.4 793 49.2
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 5.5e-131 473.0 793 52.1
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.4e-126 458.4 941 46.0
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.2e-125 455.3 802 50.4
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 2.6e-125 454.1 784 52.4
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 7.7e-125 452.6 748 48.7
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 7.7e-125 452.6 758 50.9
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 5.0e-124 449.9 801 48.7
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 3.2e-123 447.2 882 47.6
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 3.2e-123 447.2 898 47.3
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.2e-122 445.3 899 46.7
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 2.7e-122 444.1 966 45.7
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.3e-121 441.0 888 47.7
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.5e-120 438.3 715 53.7
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 8.2e-119 432.6 873 45.7
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 1.8e-118 431.4 942 39.8
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 2.4e-118 431.0 954 42.0
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 4.1e-118 430.3 919 44.9
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 2.0e-117 427.9 934 43.6
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.0e-117 427.9 916 44.9
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.0e-117 427.9 916 44.9
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 5.0e-116 423.3 802 49.6
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.9e-115 421.4 880 46.2
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 5.1e-113 413.3 798 44.7
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 4.4e-112 410.2 860 46.4
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 4.4e-112 410.2 908 43.8
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.3e-111 408.7 877 41.8
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 4.8e-111 406.8 936 44.1
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 8.2e-111 406.0 789 48.0
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 4.1e-110 403.7 959 42.0
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.6e-109 401.7 806 50.0
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 5.9e-109 399.8 939 41.4
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.5e-107 395.2 995 41.9
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.5e-107 395.2 901 42.8
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 9.4e-99 365.9 945 41.6
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 6.8e-97 359.8 844 45.3
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 2.4e-94 351.3 283 68.6
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.2e-90 339.0 849 46.5
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 6.8e-89 333.2 312 63.5
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.6e-85 322.0 835 41.6
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 8.6e-84 316.2 781 43.9
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 8.0e-82 309.7 806 45.5
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 2.4e-78 298.1 571 49.7
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 5.2e-65 253.8 284 55.3
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.6e-59 233.8 277 53.8
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.5e-56 225.7 888 35.9
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.9e-54 218.8 226 55.8
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 2.1e-50 205.3 423 40.0
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 8.9e-49 199.9 423 39.2
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.2e-46 191.0 187 58.8
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 6.0e-45 187.2 315 42.5
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.1e-41 174.9 483 35.0
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 9.0e-41 173.3 160 60.6
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 7.6e-32 143.7 137 57.7
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 6.2e-26 124.0 71 87.3
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 3.8e-23 114.8 72 79.2
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 6.0e-21 107.5 134 48.5
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 7.9e-21 107.1 133 48.9
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 9.3e-14 83.6 74 59.5
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.0e-12 80.1 127 40.9
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.3e-12 79.7 103 40.8
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 2.5e-11 75.5 100 41.0
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.3e-10 73.2 76 60.5
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.6e-10 72.8 144 35.4
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 5.9e-08 64.3 110 44.5
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 9.4e-06 57.0 756 23.4
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 9.4e-06 57.0 129 38.8


User provided reference genes

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