Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.8e-246 855.5 447 100.0
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.4e-193 679.9 447 78.3
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 4.8e-183 644.8 454 75.1
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 5.0e-180 634.8 447 74.7
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 4.0e-177 625.2 451 73.4
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 5.7e-176 621.3 448 73.2
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.7e-175 619.8 453 71.3
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.7e-175 619.8 447 72.5
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.4e-174 616.7 448 72.5
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.4e-174 615.9 448 72.5
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.7e-172 609.8 447 71.1
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 3.8e-172 608.6 460 69.8
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.2e-171 605.1 452 69.7
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.2e-170 603.6 450 69.6
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.3e-169 599.4 442 70.6
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 5.2e-169 598.2 450 71.6
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.5e-168 596.7 456 67.3
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.4e-166 590.1 448 66.7
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 3.1e-166 589.0 453 67.3
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 2.7e-165 585.9 454 67.2
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 3.5e-165 585.5 451 68.1
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 3.5e-165 585.5 457 67.6
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 2.3e-164 582.8 453 68.2
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.8e-164 582.0 460 65.4
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 2.5e-163 579.3 452 66.4
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 3.3e-163 578.9 448 67.0
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 3.6e-162 575.5 454 66.5
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 8.0e-162 574.3 454 67.4
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.0e-162 574.3 447 67.3
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.4e-161 573.5 451 67.8
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.0e-161 572.0 449 67.3
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.2e-160 570.5 447 66.9
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.5e-160 570.1 452 65.7
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.4e-160 568.9 445 67.4
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 7.5e-160 567.8 459 65.6
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.7e-159 566.6 453 67.1
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 2.2e-159 566.2 457 67.8
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.9e-159 565.8 453 67.1
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.7e-159 565.5 445 67.2
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 6.4e-159 564.7 455 67.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.9e-158 563.1 421 68.9
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.9e-158 563.1 390 73.6
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.9e-158 563.1 389 74.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.9e-158 563.1 389 74.0
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.9e-158 563.1 441 66.2
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.4e-158 562.8 439 65.8
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 2.4e-158 562.8 452 67.3
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 3.2e-158 562.4 451 68.7
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 4.1e-158 562.0 439 67.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 4.1e-158 562.0 442 66.5
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 7.0e-158 561.2 463 66.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 9.2e-158 560.8 445 65.8
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.2e-157 560.5 444 66.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.0e-157 559.7 442 66.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 2.0e-157 559.7 437 65.9
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 3.5e-157 558.9 442 66.3
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.0e-156 557.4 452 66.8
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.3e-156 556.2 443 65.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.5e-155 553.5 447 66.7
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.5e-155 553.5 456 64.0
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.9e-155 553.1 442 65.4
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 9.5e-155 550.8 425 68.5
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.2e-154 550.4 452 65.3
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.6e-154 550.1 459 64.9
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.1e-154 549.7 442 65.6
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.8e-154 549.3 449 65.0
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 4.7e-154 548.5 452 65.5
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 8.9e-153 544.3 450 64.4
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 2.0e-152 543.1 461 65.1
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.6e-152 542.7 376 72.9
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 2.6e-152 542.7 454 64.8
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 4.4e-152 542.0 451 64.5
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.4e-152 542.0 425 67.3
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.7e-151 540.0 448 64.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.7e-151 540.0 457 64.1
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 6.4e-151 538.1 456 63.6
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 8.3e-151 537.7 451 63.4
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.2e-150 535.8 452 63.9
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 7.0e-150 534.6 449 63.7
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.2e-149 533.9 452 62.8
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.1e-149 533.1 455 62.9
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 4.6e-149 531.9 452 63.5
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 6.0e-149 531.6 447 63.5
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 3.0e-148 529.3 447 63.3
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.9e-148 528.9 460 63.0
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.9e-148 528.9 460 63.0
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.9e-147 526.6 447 63.1
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.9e-147 526.6 450 63.8
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 5.6e-147 525.0 452 62.4
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.2e-146 523.9 450 61.8
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-146 523.9 450 61.8
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.2e-146 523.9 450 61.8
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 3.6e-146 522.3 449 62.4
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 8.1e-146 521.2 452 61.9
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.4e-144 515.8 399 68.4
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.4e-144 515.4 456 61.4
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.3e-143 513.8 341 74.2
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 3.5e-141 505.8 365 69.6
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 3.6e-138 495.7 362 69.1
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 8.7e-132 474.6 456 58.8
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.6e-131 471.9 451 58.1
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.1e-129 467.6 320 75.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.2e-127 459.9 450 56.4
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.6e-122 443.7 311 71.1
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.0e-116 424.5 307 71.7
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.8e-114 415.6 290 73.4
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.1e-113 414.5 282 75.9
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 6.4e-111 405.2 390 56.7
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.3e-108 397.5 373 57.9
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.5e-107 394.0 278 70.1
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.9e-107 393.7 375 56.3
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.5e-107 393.3 301 67.1
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.6e-106 390.6 377 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 6.5e-103 378.6 365 55.1
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.1e-102 377.9 374 54.5
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 9.0e-97 358.2 378 53.7
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 3.6e-93 346.3 281 65.8
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 4.6e-93 345.9 320 58.1
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 7.4e-91 338.6 369 52.6
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-90 337.8 367 52.9
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.3e-90 337.8 341 55.4
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.0e-87 328.2 360 51.1
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 3.8e-87 326.2 383 48.8
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.6e-80 303.5 388 46.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 8.5e-79 298.5 379 49.3
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.9e-70 270.8 236 60.6
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 2.5e-62 243.8 332 45.8
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.6e-45 188.0 150 64.7
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 1.4e-44 184.9 345 37.4
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.7e-40 170.6 109 77.1
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-39 168.7 169 53.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.6e-37 161.4 229 43.7
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-33 148.7 92 77.2
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-33 148.7 114 68.4
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.4e-33 147.5 135 57.8
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.7e-29 133.3 168 50.0
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 9.2e-25 119.0 74 83.8
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.2e-17 94.0 87 62.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.5e-14 85.1 105 46.7
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 9.6e-14 82.4 75 54.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.9e-11 72.4 57 66.7
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 6.6e-07 59.7 182 30.8


User provided reference genes

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