Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 6.3e-204 714.1 431 100.0
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 2.2e-76 290.4 191 92.7
SGA_v2.0_scaffold62G21345 Striga asiatica HOM05D000538 ORTHO05D000614 5.4e-38 162.9 195 69.7
SGA_v2.0_scaffold157G37398 Striga asiatica HOM05D000538 ORTHO05D000614 3.5e-37 160.2 135 89.6
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 6.6e-36 156.0 196 61.2
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 2.6e-32 144.1 185 52.4
SGA_v2.0_scaffold52G19076 Striga asiatica HOM05D000538 ORTHO05D000614 2.9e-31 140.6 243 50.6
SGA_v2.0_scaffold62G21349 Striga asiatica HOM05D000538 ORTHO05D000614 1.6e-29 134.8 175 55.4
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 2.0e-29 134.4 191 59.7
SGA_v2.0_scaffold52G19146 Striga asiatica HOM05D000538 ORTHO05D000614 3.5e-29 133.7 186 50.0
SGA_v2.0_scaffold52G19083 Striga asiatica HOM05D000538 ORTHO05D000614 1.0e-28 132.1 192 65.6
SGA_v2.0_scaffold52G19092 Striga asiatica HOM05D000538 ORTHO05D000614 1.0e-28 132.1 178 65.7
SGA_v2.0_scaffold52G19085 Striga asiatica HOM05D000538 ORTHO05D000614 2.3e-28 131.0 176 60.2
SGA_v2.0_scaffold52G19087 Striga asiatica HOM05D000538 ORTHO05D000614 1.9e-27 127.9 203 51.7
SGA_v2.0_scaffold52G19023 Striga asiatica HOM05D000538 ORTHO05D000614 7.3e-27 125.9 184 61.4
SGA_v2.0_scaffold52G19112 Striga asiatica HOM05D000538 ORTHO05D000614 8.9e-25 119.0 203 49.8
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 1.5e-24 118.2 191 47.1
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 6.4e-23 112.8 206 45.6
SGA_v2.0_scaffold24G10697 Striga asiatica HOM05D000538 ORTHO05D000614 1.4e-22 111.7 79 75.9
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 7.1e-22 109.4 203 44.3
SGA_v2.0_scaffold469G52068 Striga asiatica HOM05D000538 ORTHO05D000614 1.6e-21 108.2 172 58.1
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 3.5e-21 107.1 125 51.2
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 6.0e-21 106.3 197 43.1
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.3e-20 105.1 206 42.7
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 1.7e-20 104.8 204 41.2
SGA_v2.0_scaffold52G19080 Striga asiatica HOM05D000538 ORTHO05D000614 1.7e-20 104.8 176 46.0
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 3.0e-20 104.0 203 43.8
SGA_v2.0_scaffold12G06174 Striga asiatica HOM05D000538 ORTHO05D000614 3.0e-20 104.0 176 47.7
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 8.6e-20 102.4 259 38.2
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 3.3e-19 100.5 258 36.8
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 4.3e-19 100.1 249 37.3
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 9.5e-19 99.0 221 39.8
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 1.2e-18 98.6 191 41.9
SGA_v2.0_scaffold52G19155 Striga asiatica HOM05D000538 ORTHO05D000614 3.6e-18 97.1 161 64.6
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 4.7e-18 96.7 257 37.0
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 1.1e-17 95.5 248 35.5
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 3.1e-17 94.0 199 40.2
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 8.9e-17 92.4 256 36.7
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 1.2e-16 92.0 200 36.5
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 2.6e-16 90.9 100 53.0
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 2.6e-16 90.9 148 43.2
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 3.4e-16 90.5 179 37.4
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 7.6e-16 89.4 245 35.1
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 7.6e-16 89.4 188 38.3
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 9.9e-16 89.0 146 41.1
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 1.7e-15 88.2 199 39.7
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 1.7e-15 88.2 147 43.5
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 2.2e-15 87.8 191 40.3
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 2.2e-15 87.8 251 33.9
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 2.2e-15 87.8 241 34.0
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 3.7e-15 87.0 185 38.4
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 2.4e-14 84.3 161 40.4
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 4.1e-14 83.6 266 33.8
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 4.1e-14 83.6 128 43.0
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 5.4e-14 83.2 185 34.6
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 5.4e-14 83.2 252 34.1
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 5.4e-14 83.2 192 38.0
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 7.1e-14 82.8 239 35.6
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 7.1e-14 82.8 249 34.1
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 7.1e-14 82.8 196 38.3
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 7.1e-14 82.8 120 44.2
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 1.2e-13 82.0 192 38.0
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.1e-13 81.3 252 33.3
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 2.1e-13 81.3 255 34.9
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.5e-13 80.5 252 34.5
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 3.5e-13 80.5 147 41.5
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 7.8e-13 79.3 195 36.9
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 7.8e-13 79.3 200 37.0
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 7.8e-13 79.3 153 38.6
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 1.7e-12 78.2 177 36.2
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 2.3e-12 77.8 185 33.0
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 3.0e-12 77.4 244 33.6
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 3.0e-12 77.4 266 35.7
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 3.9e-12 77.0 252 34.1
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 5.1e-12 76.6 114 42.1
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 6.6e-12 76.3 142 40.8
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 1.5e-11 75.1 185 33.0
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 2.5e-11 74.3 200 35.0
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 2.5e-11 74.3 200 39.0
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.3e-11 73.9 85 50.6
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 4.3e-11 73.6 193 34.7
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 4.3e-11 73.6 173 34.7
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 7.3e-11 72.8 111 41.4
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 9.6e-11 72.4 211 35.1
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 9.6e-11 72.4 61 55.7
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 1.2e-10 72.0 190 34.2
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 2.1e-10 71.2 251 32.7
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 2.1e-10 71.2 145 35.2
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 2.8e-10 70.9 201 33.3
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 1.1e-09 68.9 201 32.3
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 1.4e-09 68.6 172 34.3
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.8e-09 68.2 186 36.0
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 4.0e-09 67.0 184 35.9
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 2.0e-08 64.7 149 34.9
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 2.0e-08 64.7 149 34.9
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 2.6e-08 64.3 149 34.9
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 2.6e-08 64.3 149 34.9
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 2.6e-08 64.3 149 34.9
SGA_v2.0_scaffold52G19096 Striga asiatica HOM05D000538 ORTHO05D000614 2.6e-08 64.3 60 61.7
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 3.4e-08 63.9 121 38.0
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 3.4e-08 63.9 207 35.7
SalBow5G1539 Salvia bowleyana HOM05D000538 ORTHO05D000614 4.4e-08 63.5 194 34.5
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 4.4e-08 63.5 201 30.3
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 5.8e-08 63.2 155 36.1
Migut.M01263 Erythranthe guttata HOM05D000538 ORTHO05D000614 5.8e-08 63.2 216 34.7
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 7.6e-08 62.8 121 37.2
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 7.6e-08 62.8 66 50.0
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 9.9e-08 62.4 215 32.1
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 9.9e-08 62.4 215 32.1
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.3e-07 62.0 201 31.8
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 1.3e-07 62.0 253 30.0
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 2.2e-07 61.2 65 50.8
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 2.2e-07 61.2 117 35.0
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 3.8e-07 60.5 244 32.0
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 6.4e-07 59.7 200 32.5
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 6.4e-07 59.7 244 31.6
MSTRG.14651 Avicennia marina HOM05D000538 ORTHO05D000614 1.9e-06 58.2 195 31.8
MSTRG.13164 Avicennia marina HOM05D000538 ORTHO05D000614 2.4e-06 57.8 195 29.7
MSTRG.9015 Avicennia marina HOM05D000538 ORTHO05D000614 2.4e-06 57.8 183 35.0
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 3.2e-06 57.4 261 29.1
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 4.2e-06 57.0 90 38.9
PGSC0003DMG400030831 Solanum tuberosum HOM05D000538 ORTHO05D000614 4.2e-06 57.0 84 45.2
Oeu058169.1 Olea europaea HOM05D000538 ORTHO05D000614 5.4e-06 56.6 190 31.6
Oeu058171.1 Olea europaea HOM05D000538 ORTHO05D000614 5.4e-06 56.6 190 31.6
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 5.4e-06 56.6 129 31.0
Oeu063070.2 Olea europaea HOM05D000538 ORTHO05D000614 7.1e-06 56.2 60 58.3
Sopen04g029590 Solanum pennellii HOM05D000538 ORTHO05D000614 7.1e-06 56.2 58 55.2
SGA_v2.0_scaffold52G19049 Striga asiatica HOM05D000538 ORTHO05D000614 7.1e-06 56.2 146 31.5


User provided reference genes

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