Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 7.3e-56 220.3 111 100.0
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.1e-48 196.4 131 80.2
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.4e-46 188.7 133 77.4
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.4e-46 188.7 133 77.4
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 2.4e-46 188.7 133 76.7
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.5e-45 186.0 127 76.4
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 2.0e-45 185.7 127 76.4
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 2.0e-45 185.7 127 76.4
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 3.4e-45 184.9 133 75.9
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 4.4e-45 184.5 133 75.9
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 5.8e-45 184.1 129 74.4
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 7.6e-45 183.7 133 74.4
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 1.3e-44 183.0 127 74.8
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.7e-44 182.6 133 75.2
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 2.2e-44 182.2 133 75.2
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 2.2e-44 182.2 127 77.2
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.2e-44 182.2 133 75.2
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.9e-44 181.8 127 75.6
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.9e-44 181.8 127 75.6
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 3.8e-44 181.4 127 74.0
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.8e-44 181.4 127 74.0
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.8e-44 181.4 127 74.0
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.8e-44 181.4 127 74.0
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 3.8e-44 181.4 127 74.0
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 4.9e-44 181.0 127 74.8
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.9e-44 181.0 127 74.8
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 4.9e-44 181.0 127 74.8
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 4.9e-44 181.0 127 74.0
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 6.4e-44 180.6 127 74.8
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 8.4e-44 180.3 127 74.0
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 8.4e-44 180.3 127 74.0
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 8.4e-44 180.3 127 74.0
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 8.4e-44 180.3 127 74.0
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.1e-43 179.9 127 74.0
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 1.1e-43 179.9 127 73.2
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.1e-43 179.9 127 74.0
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.1e-43 179.9 127 74.0
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.1e-43 179.9 127 73.2
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 1.4e-43 179.5 127 73.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.4e-43 179.5 125 73.6
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.4e-43 178.7 127 73.2
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 3.2e-43 178.3 127 72.4
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 3.2e-43 178.3 127 72.4
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.2e-43 178.3 127 73.2
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 4.2e-43 177.9 127 71.7
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.2e-43 177.9 127 73.2
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 4.2e-43 177.9 127 72.4
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 9.3e-43 176.8 127 72.4
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 9.3e-43 176.8 126 74.6
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 9.3e-43 176.8 129 72.1
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 1.2e-42 176.4 127 73.2
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.2e-42 176.4 127 72.4
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.6e-42 176.0 127 73.2
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 1.6e-42 176.0 127 72.4
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.6e-42 176.0 127 72.4
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.6e-42 176.0 127 72.4
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.6e-42 176.0 130 73.8
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.1e-42 175.6 127 71.7
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 2.7e-42 175.3 127 72.4
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 2.7e-42 175.3 127 71.7
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 3.5e-42 174.9 133 71.4
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 3.5e-42 174.9 126 71.4
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 4.6e-42 174.5 127 72.4
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 6.0e-42 174.1 127 71.7
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 6.0e-42 174.1 126 73.0
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 7.8e-42 173.7 133 69.9
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 7.8e-42 173.7 127 70.9
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 7.8e-42 173.7 127 70.1
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.0e-41 173.3 123 74.0
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 1.0e-41 173.3 127 70.9
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 1.3e-41 172.9 133 69.2
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.3e-41 172.9 129 69.0
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.3e-41 172.9 127 70.9
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.3e-41 172.9 126 70.6
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.7e-41 172.6 133 69.2
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 2.3e-41 172.2 127 70.1
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 2.3e-41 172.2 127 70.1
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 2.3e-41 172.2 127 70.1
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 2.3e-41 172.2 127 70.9
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.3e-41 172.2 127 71.7
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 3.0e-41 171.8 126 71.4
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 3.0e-41 171.8 127 70.9
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 5.1e-41 171.0 127 69.3
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 6.6e-41 170.6 132 69.7
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.1e-40 169.9 127 69.3
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.1e-40 169.9 150 61.3
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 1.9e-40 169.1 127 69.3
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 2.5e-40 168.7 126 70.6
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 5.6e-40 167.5 125 68.8
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 7.3e-40 167.2 127 67.7
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 7.3e-40 167.2 121 72.7
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 9.6e-40 166.8 127 69.3
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.3e-39 166.4 127 67.7
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.6e-39 166.0 126 67.5
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 2.8e-39 165.2 126 67.5
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.6e-39 164.9 111 76.6
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.4e-38 162.9 159 59.1
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.1e-38 161.8 125 64.0
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 4.0e-38 161.4 159 58.5
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 2.6e-37 158.7 127 64.6
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.6e-37 158.7 127 66.1
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.4e-37 158.3 125 64.0
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.3e-36 156.4 186 53.2
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.1e-35 153.3 127 63.0
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.4e-35 152.9 125 60.8
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.3e-32 141.7 131 61.1
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.3e-31 139.8 191 46.1
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.8e-31 138.7 121 59.5
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 3.7e-31 138.3 127 63.0
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 3.1e-30 135.2 70 88.6
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 3.4e-29 131.7 102 65.7
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 5.8e-29 131.0 128 60.2
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 9.9e-29 130.2 70 84.3
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.3e-28 129.8 123 53.7
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.9e-28 128.6 74 78.4
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 3.8e-28 128.3 126 50.8
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 1.1e-27 126.7 132 50.8
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-27 125.6 70 80.0
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.2e-27 124.8 68 80.9
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 5.5e-27 124.4 125 53.6
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.0e-26 120.9 70 78.6
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 1.8e-25 119.4 116 54.3
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 4.3e-24 114.8 133 51.9
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 7.4e-24 114.0 126 48.4
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.8e-21 104.4 72 73.6
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.2e-20 102.4 88 71.6
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 3.8e-20 101.7 88 69.3
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 6.5e-20 100.9 87 70.1
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 6.5e-20 100.9 88 69.3
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 2.1e-18 95.9 84 64.3
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.3e-17 92.4 88 59.1
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 5.1e-17 91.3 46 87.0
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 6.7e-17 90.9 82 63.4
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 6.7e-17 90.9 82 63.4
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 6.7e-17 90.9 82 63.4
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 9.7e-16 87.0 45 82.2
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.3e-14 81.3 83 56.6
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 6.9e-14 80.9 96 54.2
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.2e-13 80.1 76 61.8
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.5e-13 79.7 81 58.0
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 5.7e-08 61.2 65 50.8
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.3e-07 60.1 42 69.0
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.7e-07 58.5 80 41.2
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 8.2e-07 57.4 84 44.0


User provided reference genes

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