Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 0.0e+00 1566.6 768 100.0
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 0.0e+00 1335.5 820 82.0
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 0.0e+00 1238.0 820 75.4
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1092.4 826 66.7
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 0.0e+00 1082.4 783 70.8
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1081.2 828 66.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.8e-307 1058.9 823 64.8
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 7.3e-304 1047.0 825 63.0
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.9e-299 1032.3 825 62.8
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 2.7e-298 1028.5 829 63.7
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 6.6e-297 1023.8 863 60.3
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.1e-296 1023.1 826 62.3
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.3e-296 1021.5 827 64.0
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.2e-295 1019.6 771 67.7
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 6.2e-295 1017.3 821 62.6
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 3.1e-294 1015.0 822 62.7
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.3e-292 1009.6 827 63.5
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 6.4e-292 1007.3 828 62.1
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 6.4e-292 1007.3 825 60.8
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 8.3e-292 1006.9 825 60.8
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 7.0e-291 1003.8 828 62.2
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.0e-289 1000.0 834 61.3
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.3e-289 998.8 822 60.3
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 3.9e-289 998.0 827 61.9
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 5.0e-289 997.7 830 61.4
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 5.0e-289 997.7 822 61.3
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.6e-287 992.6 828 62.2
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 2.8e-287 991.9 826 61.0
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.4e-286 989.6 827 61.2
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.2e-285 986.5 820 61.2
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.6e-285 985.3 831 61.1
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 3.4e-285 984.9 829 60.2
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 4.4e-285 984.6 827 61.4
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.3e-284 983.0 826 60.4
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 2.9e-284 981.9 826 59.9
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.4e-284 980.7 826 61.4
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.4e-283 979.5 829 60.1
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.9e-283 979.2 828 60.1
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.7e-282 975.3 823 59.9
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 1.0e-281 973.4 828 59.8
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 3.0e-281 971.8 826 61.5
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.8e-279 965.3 866 58.8
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 3.6e-279 964.9 826 60.9
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.2e-277 959.9 818 58.8
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 2.0e-277 959.1 812 61.1
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 3.4e-277 958.4 826 60.7
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 1.7e-276 956.1 801 61.4
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 2.9e-276 955.3 883 57.6
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 4.9e-276 954.5 836 58.5
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 2.7e-274 948.7 828 58.2
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 6.0e-274 947.6 827 58.9
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 6.0e-274 947.6 838 59.1
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 1.5e-272 943.0 813 59.2
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.5e-272 943.0 825 57.9
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 2.5e-272 942.2 838 58.5
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 3.1e-270 935.3 830 56.0
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.1e-267 926.8 847 54.5
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 5.4e-267 924.5 820 57.9
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.6e-266 922.9 704 66.3
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.9e-265 918.3 770 60.9
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.1e-264 916.8 833 56.9
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.1e-264 916.8 823 58.1
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 3.3e-264 915.2 834 55.2
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 5.6e-264 914.4 824 56.9
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 9.6e-264 913.7 833 56.5
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.4e-262 909.8 834 56.7
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 3.1e-262 908.7 833 55.9
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 6.9e-262 907.5 834 57.2
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.0e-261 906.0 833 56.5
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 5.8e-261 904.4 837 55.2
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 5.8e-261 904.4 834 56.2
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 7.6e-261 904.0 833 54.7
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 2.2e-260 902.5 834 56.1
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 8.4e-260 900.6 834 56.2
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 8.4e-260 900.6 832 56.1
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-259 900.2 834 56.2
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-259 899.8 834 56.0
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.9e-259 899.4 832 55.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.9e-259 899.4 842 55.7
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.2e-259 898.7 832 56.0
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.5e-258 895.2 832 55.9
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.5e-258 895.2 842 55.5
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 4.6e-258 894.8 825 57.1
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 6.0e-258 894.4 829 56.1
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 7.9e-258 894.0 832 55.4
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 7.9e-258 894.0 827 55.7
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 1.8e-257 892.9 843 55.6
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 5.1e-257 891.3 843 55.8
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.5e-256 889.8 832 55.8
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 9.6e-256 887.1 820 54.3
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 1.6e-255 886.3 814 54.9
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 6.2e-255 884.4 717 63.2
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 9.0e-254 880.6 829 54.9
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 2.6e-253 879.0 838 53.9
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 3.4e-253 878.6 834 54.2
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.1e-251 873.6 832 55.4
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 4.2e-251 871.7 820 54.3
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 9.3e-251 870.5 834 54.0
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.7e-250 869.0 838 54.9
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 3.0e-249 865.5 832 54.1
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.9e-249 865.1 844 54.5
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 6.7e-249 864.4 830 54.1
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 3.7e-247 858.6 827 56.1
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 4.8e-247 858.2 745 57.3
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.2e-245 853.6 836 54.1
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.7e-244 849.7 824 54.0
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 2.2e-244 849.4 825 54.1
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.9e-244 849.0 838 54.3
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 3.8e-244 848.6 866 52.8
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 1.1e-243 847.0 832 53.2
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 9.3e-243 844.0 826 54.1
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.6e-242 843.2 827 56.1
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 6.0e-242 841.3 837 51.7
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 7.9e-242 840.9 825 53.5
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 2.3e-241 839.3 826 53.6
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.9e-241 838.6 815 54.1
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-240 837.0 826 53.3
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 2.5e-240 835.9 834 51.8
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 8.2e-239 830.9 875 52.2
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 6.9e-238 827.8 811 54.0
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 9.0e-238 827.4 767 53.6
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 4.5e-237 825.1 809 54.1
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-236 823.9 816 53.6
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 5.0e-236 821.6 833 52.6
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 6.5e-236 821.2 805 52.3
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 4.2e-235 818.5 725 57.0
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.8e-233 813.1 837 51.6
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 3.0e-233 812.4 841 52.9
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 6.7e-233 811.2 626 64.1
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 4.3e-232 808.5 825 53.0
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.8e-230 803.1 842 51.3
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 3.1e-230 802.4 837 51.9
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 9.1e-230 800.8 810 53.1
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.3e-224 782.3 790 52.9
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 5.7e-224 781.6 824 50.6
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 2.7e-218 762.7 831 49.7
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.0e-217 760.8 829 50.2
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 3.3e-216 755.7 826 47.7
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 6.5e-212 741.5 832 47.7
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 8.8e-201 704.5 811 48.1
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 9.8e-200 701.0 830 47.6
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.4e-198 697.2 700 53.0
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.5e-179 634.0 422 73.0
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.5e-155 554.3 601 52.7
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 5.8e-152 542.3 726 44.6
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 3.8e-151 539.7 896 37.1
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 6.2e-146 522.3 923 35.5
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.9e-143 513.5 930 35.6
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 5.6e-139 499.2 862 35.4
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 1.8e-116 424.5 904 32.1
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.0e-111 408.7 414 53.6
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.4e-110 404.8 515 45.0
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.3e-106 391.7 287 67.9
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.1e-101 374.4 249 71.5
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 9.4e-94 349.0 460 44.3
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.0e-92 345.5 268 67.5
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.3e-92 344.4 641 35.9
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 4.8e-90 336.7 264 66.3
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 1.3e-87 328.6 214 72.4
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.6e-77 293.9 259 58.7
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 6.4e-66 256.5 268 50.4
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.3e-63 248.8 838 27.4
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 2.8e-53 214.5 925 24.6
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 3.9e-47 194.1 255 46.3
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.6e-46 190.3 187 52.4
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 5.6e-46 190.3 103 91.3
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.4e-44 184.9 212 50.9
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 7.1e-41 173.3 201 51.7
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 7.8e-40 169.9 104 75.0
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 8.1e-37 159.8 111 72.1
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 1.0e-31 142.9 157 47.1
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.8e-29 134.0 104 62.5
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.1e-28 131.3 104 61.5
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 3.1e-28 131.3 116 60.3
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.2e-27 129.4 104 61.5
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.5e-27 129.0 104 60.6
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-21 109.4 100 55.0
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 3.7e-21 107.8 121 48.8
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 4.0e-20 104.4 541 26.1
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.6e-19 101.7 869 22.1
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.2e-17 94.7 62 71.0
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.3e-13 80.5 104 46.2
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 2.0e-11 75.5 107 40.2
Lj4P754T16 Lonicera japonica HOM05D003723 ORTHO05D004306 2.3e-07 62.0 41 68.3


User provided reference genes

Program Settings