Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 1.6e-85 319.3 151 100.0
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 2.8e-50 202.2 151 62.9
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 9.0e-49 197.2 147 63.9
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 3.4e-48 195.3 144 63.9
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.3e-47 193.4 154 62.3
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.3e-47 193.4 154 62.3
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 6.5e-47 191.0 147 62.6
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.9e-46 189.5 143 62.2
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.9e-46 189.5 143 62.2
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.9e-46 189.5 143 62.2
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 5.5e-46 188.0 147 60.5
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 7.1e-46 187.6 147 59.9
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 7.1e-46 187.6 147 59.9
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 9.3e-46 187.2 147 59.9
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 1.2e-45 186.8 143 60.8
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 1.2e-45 186.8 145 60.7
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 1.6e-45 186.4 144 59.7
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 1.6e-45 186.4 140 60.7
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 2.1e-45 186.0 147 59.2
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 2.1e-45 186.0 147 59.9
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 3.5e-45 185.3 147 59.2
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 4.6e-45 184.9 141 61.7
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 6.0e-45 184.5 147 59.2
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 7.9e-45 184.1 143 59.4
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 7.9e-45 184.1 143 59.4
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 7.9e-45 184.1 147 59.2
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.3e-44 183.3 147 59.2
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.3e-44 183.3 147 59.2
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.3e-44 183.3 147 59.2
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 1.8e-44 183.0 143 59.4
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 1.8e-44 183.0 143 58.7
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 1.8e-44 183.0 147 59.2
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.8e-44 183.0 140 60.0
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 1.8e-44 183.0 143 58.7
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.8e-44 183.0 144 59.7
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 3.0e-44 182.2 143 60.1
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 3.9e-44 181.8 147 59.2
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 2.5e-43 179.1 143 60.1
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 3.3e-43 178.7 143 58.0
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 3.3e-43 178.7 134 62.7
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 3.3e-43 178.7 147 57.1
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 3.3e-43 178.7 143 59.4
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 5.7e-43 177.9 147 55.8
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 5.7e-43 177.9 147 55.8
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 7.4e-43 177.6 147 58.5
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 7.4e-43 177.6 143 59.4
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 9.6e-43 177.2 147 56.5
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 9.6e-43 177.2 143 58.7
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 9.6e-43 177.2 144 58.3
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.3e-42 176.8 147 57.8
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 1.6e-42 176.4 143 59.4
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 1.6e-42 176.4 141 57.4
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 2.1e-42 176.0 140 58.6
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 2.1e-42 176.0 150 57.3
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 2.1e-42 176.0 151 55.0
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 2.8e-42 175.6 147 55.8
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 2.8e-42 175.6 140 58.6
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 2.8e-42 175.6 143 59.4
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 2.8e-42 175.6 140 59.3
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 3.7e-42 175.3 143 56.6
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 3.7e-42 175.3 144 55.6
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 4.8e-42 174.9 144 55.6
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 8.2e-42 174.1 144 56.2
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 8.2e-42 174.1 144 56.2
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 8.2e-42 174.1 140 57.9
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.4e-41 173.3 134 59.7
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.4e-41 173.3 143 55.9
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.8e-41 172.9 147 54.4
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.8e-41 172.9 147 55.1
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 1.8e-41 172.9 144 55.6
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 1.8e-41 172.9 140 58.6
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 2.4e-41 172.6 144 54.9
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 2.4e-41 172.6 144 54.9
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 2.4e-41 172.6 144 54.9
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 2.4e-41 172.6 144 54.9
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 2.4e-41 172.6 140 57.1
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 2.4e-41 172.6 149 54.4
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 3.1e-41 172.2 143 55.2
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 3.1e-41 172.2 143 55.9
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 5.3e-41 171.4 144 54.9
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 5.3e-41 171.4 144 54.9
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 5.3e-41 171.4 151 53.0
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 5.3e-41 171.4 140 57.1
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 6.9e-41 171.0 140 57.1
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 6.9e-41 171.0 154 55.2
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 6.9e-41 171.0 154 55.2
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.5e-40 169.9 140 55.0
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 2.0e-40 169.5 143 54.5
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 2.6e-40 169.1 147 54.4
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 2.6e-40 169.1 147 54.4
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 2.6e-40 169.1 147 54.4
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.6e-40 169.1 140 53.6
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 4.5e-40 168.3 144 54.9
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 5.9e-40 167.9 147 53.7
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 5.9e-40 167.9 140 57.1
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 5.9e-40 167.9 140 57.1
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.0e-39 167.2 144 54.9
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 1.0e-39 167.2 141 54.6
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 1.0e-39 167.2 141 54.6
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 1.0e-39 167.2 140 56.4
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 1.3e-39 166.8 147 53.1
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 3.8e-39 165.2 130 60.0
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 6.5e-39 164.5 131 58.8
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 8.5e-39 164.1 144 54.2
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 8.5e-39 164.1 143 55.9
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 1.1e-38 163.7 128 60.2
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 1.1e-38 163.7 141 54.6
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.4e-38 163.3 143 55.9
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.4e-38 163.3 143 55.9
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.4e-38 163.3 143 55.9
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.4e-38 163.3 143 55.9
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.4e-38 163.3 143 55.9
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.4e-38 163.3 183 47.5
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 1.4e-38 163.3 148 52.0
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 9.3e-38 160.6 140 53.6
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 2.1e-37 159.5 142 53.5
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 1.8e-36 156.4 126 58.7
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 2.3e-36 156.0 126 57.1
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 3.0e-36 155.6 130 56.9
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 5.1e-36 154.8 144 52.1
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 8.7e-36 154.1 140 55.0
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.5e-35 153.3 130 56.2
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 2.5e-35 152.5 138 50.0
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 7.4e-35 151.0 126 56.3
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.8e-33 146.4 83 79.5
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 3.1e-33 145.6 84 77.4
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 9.1e-33 144.1 115 58.3
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.2e-32 143.7 139 46.0
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 2.0e-32 142.9 139 47.5
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 2.6e-32 142.5 138 47.1
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 3.4e-32 142.1 83 72.3
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.0e-31 140.6 138 48.6
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.1e-30 137.1 73 76.7
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.1e-30 137.1 77 75.3
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 1.9e-30 136.3 74 77.0
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.7e-29 132.5 111 55.0
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 4.6e-29 131.7 172 40.7
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 6.7e-28 127.9 77 71.4
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 2.0e-27 126.3 128 47.7
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 2.6e-24 115.9 138 42.0
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.9e-23 112.5 59 81.4
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 3.8e-23 112.1 120 42.5
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 1.6e-21 106.7 130 38.5
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 1.4e-20 103.6 134 45.5
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.0e-19 99.8 73 63.0
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.7e-18 96.7 73 60.3
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 3.1e-17 92.4 65 56.9
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 3.1e-17 92.4 65 56.9
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 3.1e-17 92.4 65 56.9
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 1.0e-15 87.4 161 36.0
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 5.0e-15 85.1 60 63.3
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 1.0e-12 77.4 79 51.9
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 6.7e-12 74.7 70 44.3
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 8.8e-12 74.3 129 33.3
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 1.4e-09 67.0 89 38.2
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 1.6e-08 63.5 38 71.1
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.2e-06 55.8 73 42.5
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 9.4e-06 54.3 70 41.4


User provided reference genes

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