Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 5.4e-267 923.7 444 100.0
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 2.0e-51 207.6 132 81.8
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 7.5e-27 125.9 161 42.9
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 2.9e-26 124.0 152 47.4
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 1.1e-25 122.1 159 43.4
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 1.8e-25 121.3 152 45.4
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 1.8e-25 121.3 152 44.7
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 2.4e-25 120.9 152 43.4
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 3.2e-25 120.6 161 43.5
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 5.4e-25 119.8 152 44.1
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 9.2e-25 119.0 152 43.4
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 9.2e-25 119.0 155 44.5
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 9.2e-25 119.0 152 42.8
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 9.2e-25 119.0 151 42.4
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 1.2e-24 118.6 152 44.1
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 1.2e-24 118.6 152 42.8
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 1.6e-24 118.2 152 43.4
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 2.0e-24 117.9 161 43.5
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 2.0e-24 117.9 152 43.4
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.0e-24 117.9 161 42.9
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.0e-24 117.9 161 42.9
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 2.7e-24 117.5 163 42.3
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.7e-24 117.5 152 42.8
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 2.7e-24 117.5 152 44.1
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 3.5e-24 117.1 169 40.8
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 3.5e-24 117.1 152 42.8
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 5.9e-24 116.3 148 43.2
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 5.9e-24 116.3 152 41.4
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 5.9e-24 116.3 179 39.1
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 7.8e-24 115.9 152 44.1
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 7.8e-24 115.9 161 41.6
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 1.0e-23 115.5 152 43.4
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.3e-23 115.2 152 42.8
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 2.3e-23 114.4 152 42.1
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.3e-23 114.4 161 41.6
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.3e-23 114.4 161 41.0
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 2.9e-23 114.0 161 41.6
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.9e-23 114.0 152 42.8
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 2.9e-23 114.0 152 40.8
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 2.9e-23 114.0 152 42.8
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 3.9e-23 113.6 152 42.8
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 3.9e-23 113.6 161 41.6
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.9e-23 113.6 152 42.1
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 5.0e-23 113.2 161 41.0
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 5.0e-23 113.2 161 40.4
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 6.6e-23 112.8 152 41.4
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 6.6e-23 112.8 152 42.1
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 6.6e-23 112.8 152 42.8
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 6.6e-23 112.8 152 42.8
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 6.6e-23 112.8 152 40.8
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 6.6e-23 112.8 152 41.4
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 8.6e-23 112.5 152 42.1
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.1e-22 112.1 134 44.8
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 1.1e-22 112.1 161 39.8
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.1e-22 112.1 152 42.8
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.1e-22 112.1 163 40.5
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 1.1e-22 112.1 163 40.5
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.1e-22 112.1 161 40.4
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.1e-22 112.1 163 40.5
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 1.5e-22 111.7 150 41.3
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.5e-22 111.7 161 40.4
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.5e-22 111.7 161 41.0
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 1.9e-22 111.3 161 41.0
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 1.9e-22 111.3 156 42.9
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 1.9e-22 111.3 152 42.1
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 1.9e-22 111.3 152 42.8
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 1.9e-22 111.3 152 42.1
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 3.3e-22 110.5 152 40.8
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 3.3e-22 110.5 152 40.1
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.3e-22 110.5 152 42.1
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 4.3e-22 110.2 153 41.2
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 4.3e-22 110.2 153 42.5
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 7.3e-22 109.4 161 40.4
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 9.5e-22 109.0 152 42.1
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 9.5e-22 109.0 161 40.4
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 9.5e-22 109.0 161 39.1
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 1.2e-21 108.6 161 39.8
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 1.2e-21 108.6 152 39.5
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 1.2e-21 108.6 152 40.8
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.2e-21 108.6 136 44.9
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 1.6e-21 108.2 161 39.8
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 1.6e-21 108.2 161 39.8
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 1.6e-21 108.2 161 39.8
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 1.6e-21 108.2 197 37.1
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.6e-21 108.2 161 41.0
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 1.6e-21 108.2 152 38.2
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.6e-21 108.2 161 39.8
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 1.6e-21 108.2 196 37.8
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 2.1e-21 107.8 152 41.4
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 2.1e-21 107.8 161 39.8
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 2.1e-21 107.8 135 43.7
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 2.8e-21 107.5 161 39.8
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 2.8e-21 107.5 161 39.8
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.8e-21 107.5 152 40.1
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 2.8e-21 107.5 152 41.4
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 2.8e-21 107.5 143 42.7
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 3.6e-21 107.1 161 39.1
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 3.6e-21 107.1 161 39.1
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 3.6e-21 107.1 135 43.0
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 3.6e-21 107.1 152 40.1
SGA_v2.0_scaffold223G42883 Striga asiatica HOM05D000002 ORTHO05D000001 3.6e-21 107.1 160 35.6
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 4.7e-21 106.7 152 40.1
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.7e-21 106.7 152 40.1
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 6.2e-21 106.3 161 38.5
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 6.2e-21 106.3 152 41.4
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 6.2e-21 106.3 152 42.1
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 8.0e-21 105.9 152 39.5
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 8.0e-21 105.9 134 44.0
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 1.0e-20 105.5 152 39.5
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.0e-20 105.5 152 41.4
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.4e-20 105.1 161 39.8
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.8e-20 104.8 161 37.9
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.3e-20 104.4 155 39.4
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 3.1e-20 104.0 164 39.0
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.1e-20 104.0 155 40.6
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 3.1e-20 104.0 153 42.5
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 4.0e-20 103.6 161 39.1
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 4.0e-20 103.6 152 38.8
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 4.0e-20 103.6 152 38.8
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 5.2e-20 103.2 161 39.1
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 5.2e-20 103.2 161 39.1
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 5.2e-20 103.2 161 39.1
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 5.2e-20 103.2 223 34.1
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 5.2e-20 103.2 161 39.8
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 6.8e-20 102.8 143 42.7
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 8.9e-20 102.4 161 39.1
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.2e-19 102.1 155 39.4
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 1.5e-19 101.7 161 39.1
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.6e-19 100.9 135 39.3
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 3.4e-19 100.5 143 39.9
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.4e-19 100.5 155 39.4
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 4.4e-19 100.1 134 41.8
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 9.8e-19 99.0 144 38.9
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 9.8e-19 99.0 144 38.9
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 9.8e-19 99.0 144 38.9
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 9.8e-19 99.0 162 38.3
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 9.8e-19 99.0 152 40.1
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 2.2e-18 97.8 205 33.7
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 2.9e-18 97.4 144 38.2
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 2.9e-18 97.4 145 39.3
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.1e-17 95.5 152 39.5
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.4e-17 95.1 159 37.1
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 7.0e-17 92.8 144 39.6
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 6.0e-16 89.7 86 54.7
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.0e-15 89.0 143 37.8
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 3.0e-15 87.4 143 36.4
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.1e-14 85.5 152 33.6
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 2.1e-13 81.3 138 37.0
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.2e-11 75.5 86 47.7
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 1.2e-11 75.5 87 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 3.4e-11 73.9 132 35.6
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.9e-09 68.2 157 33.1
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 4.1e-09 67.0 147 33.3
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 1.2e-08 65.5 143 35.0
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 8.6e-07 59.3 48 52.1
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 8.6e-07 59.3 135 31.9
Duzib150G0131 Durio zibethinus HOM05D000001 ORTHO05D000501 7.3e-06 56.2 143 28.0


User provided reference genes

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