Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36324 Striga asiatica HOM05D002263 ORTHO05D016312 2.8e-54 214.9 103 100.0
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 3.0e-19 98.6 55 85.5
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.3e-11 72.4 59 57.6
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 8.7e-11 70.5 42 71.4
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 1.1e-10 70.1 65 52.3
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.1e-10 70.1 61 54.1
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.5e-10 69.7 54 61.1
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.5e-10 69.7 54 61.1
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.5e-10 68.9 44 68.2
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 4.3e-10 68.2 46 67.4
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 5.6e-10 67.8 65 53.8
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 7.3e-10 67.4 66 53.0
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 7.3e-10 67.4 59 52.5
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 9.6e-10 67.0 47 59.6
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 9.6e-10 67.0 51 60.8
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 1.6e-09 66.2 54 59.3
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 1.6e-09 66.2 61 50.8
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.6e-09 66.2 44 63.6
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 1.6e-09 66.2 56 57.1
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 1.6e-09 66.2 56 57.1
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 2.8e-09 65.5 53 60.4
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.8e-09 65.5 63 54.0
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 2.8e-09 65.5 44 63.6
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.8e-09 65.5 45 60.0
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.8e-09 65.5 45 60.0
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 2.8e-09 65.5 45 66.7
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 3.6e-09 65.1 45 66.7
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 3.6e-09 65.1 57 54.4
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 3.6e-09 65.1 44 65.9
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 3.6e-09 65.1 45 64.4
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 4.8e-09 64.7 44 61.4
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 4.8e-09 64.7 53 58.5
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 4.8e-09 64.7 53 58.5
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 4.8e-09 64.7 49 61.2
TWI09G0750 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 4.8e-09 64.7 64 48.4
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 6.2e-09 64.3 45 62.2
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 6.2e-09 64.3 53 56.6
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 6.2e-09 64.3 54 57.4
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 6.2e-09 64.3 60 53.3
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 6.2e-09 64.3 60 56.7
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 6.2e-09 64.3 64 46.9
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 8.1e-09 63.9 62 51.6
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 8.1e-09 63.9 54 53.7
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 8.1e-09 63.9 58 51.7
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 8.1e-09 63.9 54 53.7
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 8.1e-09 63.9 59 50.8
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 8.1e-09 63.9 42 61.9
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 1.1e-08 63.5 51 58.8
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 1.1e-08 63.5 44 59.1
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 1.1e-08 63.5 55 56.4
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 1.1e-08 63.5 55 56.4
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.1e-08 63.5 46 63.0
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 1.1e-08 63.5 62 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 1.4e-08 63.2 42 66.7
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 1.4e-08 63.2 48 56.2
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 1.4e-08 63.2 53 56.6
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 1.4e-08 63.2 56 55.4
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 1.4e-08 63.2 56 55.4
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.8e-08 62.8 51 52.9
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.8e-08 62.8 51 52.9
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 1.8e-08 62.8 46 56.5
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 1.8e-08 62.8 61 52.5
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 1.8e-08 62.8 45 60.0
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.8e-08 62.8 51 58.8
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 2.4e-08 62.4 47 55.3
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 2.4e-08 62.4 42 61.9
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 2.4e-08 62.4 53 54.7
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 3.1e-08 62.0 50 58.0
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 3.1e-08 62.0 50 58.0
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 3.1e-08 62.0 45 60.0
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 3.1e-08 62.0 42 64.3
SEGI_10251 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 3.1e-08 62.0 45 57.8
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 4.0e-08 61.6 45 60.0
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 4.0e-08 61.6 51 54.9
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 4.0e-08 61.6 45 60.0
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 4.0e-08 61.6 45 60.0
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 4.0e-08 61.6 45 60.0
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 4.0e-08 61.6 45 60.0
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 4.0e-08 61.6 45 60.0
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 4.0e-08 61.6 42 66.7
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 4.0e-08 61.6 45 57.8
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 4.0e-08 61.6 60 51.7
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 4.0e-08 61.6 42 64.3
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 4.0e-08 61.6 43 65.1
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 5.3e-08 61.2 45 60.0
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 5.3e-08 61.2 42 66.7
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 5.3e-08 61.2 45 62.2
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 5.3e-08 61.2 42 66.7
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 5.3e-08 61.2 52 55.8
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 5.3e-08 61.2 45 62.2
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 6.9e-08 60.8 42 61.9
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 6.9e-08 60.8 38 65.8
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 6.9e-08 60.8 42 64.3
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 6.9e-08 60.8 42 64.3
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 6.9e-08 60.8 42 64.3
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 6.9e-08 60.8 42 64.3
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 6.9e-08 60.8 42 64.3
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 9.0e-08 60.5 42 61.9
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 9.0e-08 60.5 38 68.4
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 9.0e-08 60.5 42 59.5
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 9.0e-08 60.5 57 52.6
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 9.0e-08 60.5 38 68.4
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.2e-07 60.1 42 61.9
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 1.2e-07 60.1 59 50.8
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.2e-07 60.1 52 53.8
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.2e-07 60.1 42 61.9
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.2e-07 60.1 40 65.0
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.2e-07 60.1 40 65.0
SEGI_32368 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 1.2e-07 60.1 45 55.6
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 1.2e-07 60.1 42 59.5
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 1.2e-07 60.1 48 54.2
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 1.5e-07 59.7 42 61.9
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.5e-07 59.7 37 64.9
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 1.5e-07 59.7 45 57.8
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 1.5e-07 59.7 45 57.8
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 1.5e-07 59.7 42 64.3
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 2.0e-07 59.3 42 61.9
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.0e-07 59.3 37 62.2
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 2.0e-07 59.3 37 67.6
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 2.0e-07 59.3 37 67.6
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 2.0e-07 59.3 43 60.5
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 2.0e-07 59.3 45 57.8
Sabra16G0162200 Salix brachista HOM05D002263 ORTHO05D016312 2.0e-07 59.3 42 61.9
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 2.6e-07 58.9 42 64.3
COL.COLO4_15050 Corchorus olitorius HOM05D002263 ORTHO05D003537 2.6e-07 58.9 55 50.9
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 2.6e-07 58.9 42 61.9
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 2.6e-07 58.9 57 50.9
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 2.6e-07 58.9 57 50.9
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 2.6e-07 58.9 57 50.9
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 2.6e-07 58.9 43 62.8
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 2.6e-07 58.9 42 64.3
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 3.4e-07 58.5 42 57.1
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 3.4e-07 58.5 43 60.5
FAN01G1372 Fragaria x ananassa HOM05D002263 ORTHO05D016312 4.5e-07 58.2 38 65.8
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 4.5e-07 58.2 43 58.1
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 1.3e-06 56.6 38 60.5
Hma1.2p1_2160F.1_g315570 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.7e-06 56.2 38 63.2
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.2e-06 55.8 37 62.2
FAN13G3028 Fragaria x ananassa HOM05D002263 ORTHO05D016312 2.2e-06 55.8 38 63.2
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 3.8e-06 55.1 64 48.4
FAN09G0839 Fragaria x ananassa HOM05D002263 ORTHO05D016312 4.9e-06 54.7 36 63.9
FAN05G0547 Fragaria x ananassa HOM05D002263 ORTHO05D016312 6.4e-06 54.3 42 57.1
FAN05G1023 Fragaria x ananassa HOM05D002263 ORTHO05D016312 6.4e-06 54.3 42 57.1


User provided reference genes

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