Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 4.8e-140 501.1 246 100.0
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 8.8e-102 374.0 228 86.0
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 1.1e-91 340.5 226 77.9
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 5.9e-82 308.1 222 68.0
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 1.7e-81 306.6 227 68.7
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 4.2e-80 302.0 224 67.4
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 7.2e-80 301.2 221 69.7
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 2.1e-79 299.7 228 65.8
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 2.1e-79 299.7 276 60.9
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 8.0e-79 297.7 241 63.1
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 1.0e-78 297.4 226 64.2
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 1.0e-78 297.4 225 65.3
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.4e-78 297.0 228 65.4
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 1.4e-78 297.0 221 66.1
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 1.8e-78 296.6 241 63.1
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 3.0e-78 295.8 225 64.9
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 4.0e-78 295.4 226 63.7
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 8.8e-78 294.3 227 63.9
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 1.5e-77 293.5 233 62.2
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 2.6e-77 292.7 221 65.6
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 3.4e-77 292.4 228 63.6
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 7.5e-77 291.2 228 64.0
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 7.5e-77 291.2 228 64.0
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 9.8e-77 290.8 228 63.2
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 1.3e-76 290.4 241 61.8
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 2.2e-76 289.7 228 61.8
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 2.8e-76 289.3 231 63.2
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 3.7e-76 288.9 228 64.0
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 3.7e-76 288.9 225 66.2
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 3.7e-76 288.9 223 65.0
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 8.3e-76 287.7 221 67.9
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 1.4e-75 287.0 222 63.5
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 5.4e-75 285.0 221 65.6
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 3.5e-74 282.3 225 63.1
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 4.5e-74 282.0 224 61.2
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 5.9e-74 281.6 198 67.2
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 1.3e-73 280.4 224 61.6
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 1.7e-73 280.0 224 62.5
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 6.5e-73 278.1 222 64.4
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 8.5e-73 277.7 224 61.6
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 2.5e-72 276.2 235 60.0
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 4.2e-72 275.4 225 60.0
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 1.2e-71 273.9 224 60.3
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 3.6e-71 272.3 224 60.3
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 4.7e-71 271.9 226 62.4
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 4.7e-71 271.9 229 59.8
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 1.0e-70 270.8 224 61.2
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 1.4e-70 270.4 235 59.1
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 1.8e-70 270.0 227 60.4
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 1.8e-70 270.0 229 59.0
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 2.3e-70 269.6 222 59.9
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 2.3e-70 269.6 246 58.5
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 3.0e-70 269.2 222 59.9
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 5.2e-70 268.5 224 59.8
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 6.8e-70 268.1 213 63.4
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 6.8e-70 268.1 224 62.1
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 8.8e-70 267.7 224 59.8
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 1.2e-69 267.3 229 59.4
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.5e-69 266.9 228 58.3
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 2.0e-69 266.5 224 61.2
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 2.6e-69 266.2 224 60.7
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 3.4e-69 265.8 266 53.4
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 4.4e-69 265.4 218 61.0
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 9.8e-69 264.2 229 61.1
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 1.7e-68 263.5 229 59.0
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 6.3e-68 261.5 231 58.9
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 6.3e-68 261.5 228 56.6
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 1.1e-67 260.8 226 59.3
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 1.4e-67 260.4 226 59.3
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 1.4e-67 260.4 229 59.0
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 2.4e-67 259.6 226 58.0
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.2e-66 257.3 222 59.0
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.2e-66 257.3 222 59.0
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 1.7e-65 253.4 224 56.7
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 2.3e-65 253.1 224 58.9
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 2.9e-65 252.7 224 58.0
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 3.8e-65 252.3 212 59.9
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 6.6e-65 251.5 227 59.5
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 1.5e-64 250.4 224 57.1
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 5.6e-64 248.4 264 51.5
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 9.5e-64 247.7 224 57.1
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 2.8e-63 246.1 224 54.9
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 3.6e-63 245.7 224 55.8
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 6.8e-62 241.5 220 59.5
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 8.9e-62 241.1 221 57.0
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 7.5e-61 238.0 153 73.9
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.3e-60 237.3 209 57.9
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 2.9e-60 236.1 228 55.7
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 8.3e-60 234.6 235 56.2
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 1.2e-58 230.7 219 53.4
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 2.7e-58 229.6 219 53.4
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 2.1e-55 219.9 192 58.3
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 4.7e-55 218.8 119 89.9
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 4.7e-55 218.8 155 68.4
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 1.2e-53 214.2 178 59.6
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 4.4e-53 212.2 210 52.4
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 4.4e-53 212.2 210 52.4
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 4.4e-53 212.2 179 60.3
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 3.7e-52 209.1 153 66.0
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 1.9e-51 206.8 214 51.4
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 4.1e-51 205.7 211 52.1
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 7.0e-51 204.9 184 57.6
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 4.6e-50 202.2 170 61.2
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 3.0e-49 199.5 213 54.5
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 3.0e-49 199.5 122 77.9
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 8.6e-49 198.0 213 54.5
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 6.0e-42 175.3 111 76.6
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 8.6e-41 171.4 121 66.9
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 4.7e-39 165.6 154 53.9
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 1.5e-37 160.6 145 57.9
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 7.6e-37 158.3 146 53.4
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 1.3e-36 157.5 211 44.1
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 1.6e-34 150.6 216 44.9
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 3.9e-33 146.0 135 54.1
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 2.0e-29 133.7 217 37.8
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 6.2e-23 112.1 130 50.0
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 3.1e-22 109.8 77 66.2
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 1.2e-21 107.8 218 33.0
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 2.0e-21 107.1 74 62.2
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 3.2e-11 73.2 43 76.7
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 2.3e-09 67.0 75 45.3
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 6.9e-06 55.5 76 40.8


User provided reference genes

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