Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 0.0e+00 1219.9 650 100.0
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 6.6e-165 585.1 663 55.1
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 1.6e-102 377.9 668 43.6
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 7.5e-92 342.4 720 39.4
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 6.8e-85 319.3 660 40.2
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 3.9e-48 197.2 393 31.6
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 7.3e-47 193.0 787 28.2
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 2.4e-42 177.9 783 28.4
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 1.7e-40 171.8 696 27.3
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.1e-38 164.9 834 25.5
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 2.0e-36 158.3 364 32.4
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 1.3e-35 155.6 307 34.5
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 2.7e-33 147.9 313 31.6
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.5e-33 147.5 372 31.7
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.3e-32 144.8 370 30.8
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.1e-31 142.5 633 27.2
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.1e-29 136.0 342 31.6
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.1e-29 136.0 651 25.0
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 5.3e-29 133.7 373 30.0
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.0e-28 131.7 662 25.1
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 2.0e-28 131.7 679 26.2
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.6e-28 131.3 375 28.3
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 5.8e-28 130.2 363 31.1
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 7.6e-28 129.8 361 30.5
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 9.9e-28 129.4 369 30.9
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.8e-27 127.5 378 28.0
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.8e-27 127.5 378 28.0
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 6.4e-27 126.7 469 28.4
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 6.4e-27 126.7 468 27.8
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 8.4e-27 126.3 299 32.1
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 1.1e-26 125.9 632 24.7
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 2.4e-26 124.8 547 26.9
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.1e-25 121.7 686 25.1
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.1e-25 121.7 365 28.8
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.1e-25 121.7 366 30.3
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 3.5e-25 120.9 371 26.4
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 3.5e-25 120.9 365 28.5
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 6.0e-25 120.2 587 26.9
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 7.9e-25 119.8 322 29.8
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.0e-24 119.4 518 27.0
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 1.3e-24 119.0 527 27.1
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 1.8e-24 118.6 366 29.5
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 3.0e-24 117.9 566 28.4
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.9e-24 117.5 456 26.3
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 6.7e-24 116.7 365 28.2
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 1.5e-23 115.5 472 27.8
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 1.9e-23 115.2 524 25.6
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.9e-23 115.2 367 26.4
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 2.5e-23 114.8 370 30.3
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 9.6e-23 112.8 307 27.7
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 9.6e-23 112.8 354 27.4
Oeu048797.1 Olea europaea HOM05D003520 ORTHO05D003332 1.3e-22 112.5 113 50.4
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 2.1e-22 111.7 374 28.3
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 4.8e-22 110.5 348 28.7
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.4e-21 109.0 388 25.3
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.8e-21 108.6 313 29.1
Oeu048798.1 Olea europaea HOM05D003520 ORTHO05D003332 1.8e-21 108.6 115 48.7
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 2.4e-21 108.2 484 26.2
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.4e-21 108.2 545 25.9
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 9.0e-21 106.3 270 28.5
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.2e-20 105.9 316 29.7
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 2.0e-20 105.1 496 26.4
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 2.6e-20 104.8 229 36.2
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 1.0e-19 102.8 229 31.4
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 2.2e-19 101.7 231 34.2
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 3.8e-19 100.9 566 22.8
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 4.9e-19 100.5 616 27.3
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 8.4e-19 99.8 614 27.2
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 8.4e-19 99.8 617 24.3
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.1e-18 99.4 540 27.2
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 1.4e-18 99.0 514 27.4
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 9.3e-18 96.3 574 24.7
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 2.1e-17 95.1 269 27.1
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.7e-17 94.7 691 25.0
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 2.7e-17 94.7 166 34.9
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 7.9e-17 93.2 565 24.1
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 3.0e-16 91.3 401 25.2
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 3.0e-16 91.3 339 29.8
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 3.0e-16 91.3 87 49.4
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 3.9e-16 90.9 333 26.7
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.7e-16 90.1 230 32.2
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 8.7e-16 89.7 391 24.3
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 1.1e-15 89.4 253 28.1
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.1e-15 89.4 470 25.5
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.5e-15 88.2 260 30.8
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 5.7e-15 87.0 83 49.4
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 7.4e-15 86.7 263 28.9
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.3e-14 85.9 483 24.4
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 1.3e-14 85.9 314 28.7
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 1.6e-14 85.5 272 27.6
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 2.8e-14 84.7 80 46.2
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 4.8e-14 84.0 155 36.8
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.1e-13 82.8 354 27.7
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.8e-13 82.0 134 37.3
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 3.1e-13 81.3 285 28.8
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 4.1e-13 80.9 345 28.4
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 4.1e-13 80.9 345 28.1
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 6.9e-13 80.1 247 31.2
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.0e-12 78.6 104 38.5
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.0e-12 78.6 104 38.5
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 2.6e-12 78.2 729 24.4
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 2.6e-12 78.2 622 24.8
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 3.4e-12 77.8 90 44.4
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 4.5e-12 77.4 184 32.6
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 4.5e-12 77.4 271 25.8
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 5.9e-12 77.0 310 25.5
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 5.9e-12 77.0 151 33.1
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 7.6e-12 76.6 412 27.7
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.6e-12 76.6 578 24.2
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.3e-11 75.9 134 32.8
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 1.3e-11 75.9 92 42.4
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 1.3e-11 75.9 237 30.0
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 1.7e-11 75.5 308 25.6
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 1.7e-11 75.5 236 29.2
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 2.9e-11 74.7 484 24.6
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 3.8e-11 74.3 426 22.1
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 3.8e-11 74.3 146 32.2
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 5.0e-11 73.9 116 38.8
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 5.0e-11 73.9 73 47.9
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 1.1e-10 72.8 80 45.0
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 1.4e-10 72.4 422 26.5
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.9e-10 72.0 75 42.7
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 1.9e-10 72.0 72 47.2
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 1.9e-10 72.0 150 34.7
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 3.2e-10 71.2 518 24.1
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 3.2e-10 71.2 175 29.7
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 3.2e-10 71.2 91 44.0
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 5.5e-10 70.5 84 38.1
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 7.2e-10 70.1 222 27.5
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 7.2e-10 70.1 576 26.0
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 7.2e-10 70.1 223 26.9
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 9.3e-10 69.7 105 35.2
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.2e-09 69.3 373 24.1
Os04g0613800 Oryza sativa ssp. japonica HOM05D023145 ORTHO05D003332 1.6e-09 68.9 365 25.5
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 2.1e-09 68.6 232 30.2
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 3.5e-09 67.8 318 26.7
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 3.5e-09 67.8 251 32.7
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 4.6e-09 67.4 353 26.1
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 4.6e-09 67.4 59 45.8
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 7.9e-09 66.6 331 26.3
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.8e-08 65.5 392 25.5
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 3.0e-08 64.7 68 47.1
TAR636G1398 Trochodendron aralioides HOM05D003520 ORTHO05D003332 3.9e-08 64.3 120 37.5
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 6.7e-08 63.5 89 38.2
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 6.7e-08 63.5 70 47.1
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 6.7e-08 63.5 361 24.9
BcaC04g20600 Brassica carinata HOM05D012366 ORTHO05D003332 8.7e-08 63.2 72 43.1
C09p41640 Brassica napus HOM05D012366 ORTHO05D003332 8.7e-08 63.2 72 43.1
A10p09930 Brassica napus HOM05D012366 ORTHO05D003332 1.5e-07 62.4 72 43.1
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 1.5e-07 62.4 96 38.5
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.5e-07 62.4 375 28.5
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.9e-07 62.0 154 27.9
THA.LOC104809412 Tarenaya hassleriana HOM05D012020 ORTHO05D013949 1.9e-07 62.0 130 31.5
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.5e-07 61.6 84 34.5
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 2.5e-07 61.6 372 25.5
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 3.3e-07 61.2 172 30.2
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 3.3e-07 61.2 374 23.3
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 3.3e-07 61.2 433 24.9
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 4.3e-07 60.8 90 34.4
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 7.4e-07 60.1 224 29.0
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 7.4e-07 60.1 223 25.6
MELO3C033074.2 Cucumis melo HOM05D003520 ORTHO05D003332 9.7e-07 59.7 84 34.5
BcaB08g35576 Brassica carinata HOM05D012366 ORTHO05D003332 1.3e-06 59.3 64 45.3
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.3e-06 59.3 64 43.8
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.6e-06 58.9 281 24.9
Os04g0273900 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 2.2e-06 58.5 261 24.5
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 3.7e-06 57.8 169 29.6
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.7e-06 57.8 260 27.3
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 4.8e-06 57.4 254 24.4
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 4.8e-06 57.4 264 25.0
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 6.3e-06 57.0 348 25.6


User provided reference genes

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