Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 5025.7 2553 100.0
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 3220.3 2577 65.5
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 3098.1 2575 63.5
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 3072.3 2630 62.2
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 2709.9 2548 59.3
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 2624.7 2315 61.7
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 2430.2 2752 50.3
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2381.7 2610 50.9
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2367.4 2617 50.5
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 2260.3 2605 49.1
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 2166.7 2581 47.1
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 2161.7 2581 47.2
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 2140.5 2581 46.7
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2134.8 2717 47.1
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2094.3 2609 46.1
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2088.5 2618 46.4
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2082.4 2642 45.9
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2034.6 2586 45.8
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2033.5 2610 45.6
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2006.9 2650 44.4
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1996.9 2604 46.5
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1978.8 2609 44.7
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1938.3 2676 43.9
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1914.4 2626 43.2
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1908.6 2614 43.5
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1899.8 2624 42.9
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1897.1 2600 43.5
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1890.9 2613 42.6
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1882.8 2609 43.5
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1873.2 2611 42.7
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1856.6 2668 42.6
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1822.4 2596 42.1
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1821.6 2594 42.3
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1820.4 2388 45.0
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1818.5 2602 42.2
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1805.4 2601 41.5
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1801.6 2563 41.7
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1778.5 2520 42.1
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1755.0 2602 40.4
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1735.7 2617 40.8
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1723.4 2611 39.5
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1718.0 2667 40.4
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1713.0 2517 42.0
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1712.2 2631 40.6
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1712.2 2243 44.6
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1705.6 2273 44.0
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1694.1 2596 40.1
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1684.8 2632 40.1
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1670.6 2672 40.1
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1670.6 2584 40.3
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1670.2 2580 40.3
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1667.9 2652 39.3
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1661.0 2581 40.3
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1659.8 2658 40.1
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1655.6 2619 39.3
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1655.2 2621 39.5
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1650.6 2601 39.8
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1646.7 2586 39.8
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1646.3 2668 40.0
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1644.0 2628 39.5
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1640.6 2639 39.6
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1635.9 2606 39.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1617.4 2677 38.3
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1610.1 2611 38.8
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1607.8 2617 39.3
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1568.9 2558 39.1
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1555.4 2615 38.6
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1551.2 2583 38.2
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1544.3 2007 43.6
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1533.5 2554 38.4
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1512.7 2642 37.7
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1500.7 2048 44.3
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1469.1 2595 37.5
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1456.8 2690 37.2
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1444.1 2633 37.3
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1427.5 2633 37.1
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1426.0 2468 37.7
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1422.5 2664 36.6
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1416.7 2639 35.7
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1414.1 2666 36.6
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1391.3 2558 36.4
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1360.1 2154 39.4
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1353.2 1790 44.7
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1333.2 2523 36.1
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1331.2 1698 44.9
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1324.3 2613 35.5
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1283.5 2332 35.9
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1260.4 2599 35.1
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1248.8 2597 34.4
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1231.5 2593 34.3
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1173.3 2228 35.5
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1149.4 2045 36.0
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1123.6 1799 40.8
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1119.4 1742 39.4
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1095.1 2129 35.7
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 3.5e-311 1073.2 2208 34.2
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 2.1e-283 980.7 2485 31.7
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.5e-249 866.7 911 52.4
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 8.2e-227 792.7 783 55.4
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 2.0e-209 734.9 2765 26.2
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 4.5e-209 733.8 2725 26.2
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.6e-193 682.2 817 47.2
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.2e-182 646.0 2563 26.7
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.1e-175 622.9 1150 35.8
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 7.3e-175 620.2 2565 25.7
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 2.9e-171 608.2 2806 26.0
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.9e-170 605.5 589 57.9
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.0e-160 573.2 620 53.1
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.7e-153 548.5 1260 33.0
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 5.3e-141 507.7 1130 32.7
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.5e-132 478.0 749 40.6
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.9e-131 475.3 775 40.6
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 3.2e-130 471.9 616 45.3
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.7e-123 449.5 903 33.9
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.4e-122 446.4 559 45.8
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 7.2e-122 444.1 406 57.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.7e-119 433.7 952 34.7
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.8e-118 432.2 659 42.3
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 7.7e-108 397.5 515 43.1
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.4e-93 350.1 686 34.3
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.6e-89 336.7 475 40.4
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 4.1e-85 322.0 2652 21.6
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.8e-80 304.7 474 40.9
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 7.5e-79 301.2 346 49.7
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 9.8e-79 300.8 925 29.9
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 2.0e-76 293.1 326 52.1
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 6.6e-67 261.5 395 40.5
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.1e-50 207.6 183 59.0
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.9e-50 206.8 213 58.2
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 5.8e-47 195.3 342 36.3
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.7e-43 183.7 233 43.8
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 2.3e-43 183.3 341 34.6
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.7e-36 159.8 180 49.4
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.3e-35 156.8 300 34.7
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 5.6e-34 152.1 241 39.4
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.1e-32 147.9 499 28.1
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.7e-30 140.6 327 32.7
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 2.9e-30 139.8 333 33.0
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.6e-28 134.0 139 48.9
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 7.9e-28 131.7 123 52.8
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 9.6e-26 124.8 181 41.4
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.1e-24 119.8 142 49.3
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.1e-21 111.3 119 42.9
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.2e-20 107.8 228 33.3
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.8e-19 104.0 211 35.5
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.9e-18 100.5 60 76.7
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 1.1e-16 94.7 325 27.4
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.8e-16 94.0 127 47.2
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 9.0e-16 91.7 167 40.1
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 9.0e-16 91.7 92 51.1
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.0e-15 90.5 323 25.4
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.0e-15 90.5 323 25.4
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 9.3e-13 81.6 129 37.2
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-12 81.3 260 27.3
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 5.1e-11 75.9 129 31.8
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 6.7e-11 75.5 64 57.8
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 8.7e-11 75.1 69 59.4
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.3e-10 72.8 200 29.0
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 1.6e-09 70.9 70 57.1
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.7e-09 69.7 408 20.3
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 6.9e-08 65.5 84 42.9
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 9.0e-08 65.1 64 40.6
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 2.9e-06 60.1 146 35.6


User provided reference genes

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