Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 0.0e+00 1114.0 566 100.0
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 2.7e-199 699.1 485 75.7
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 4.5e-186 655.2 463 73.7
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 3.7e-180 635.6 469 71.2
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 3.5e-178 629.0 449 72.6
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 1.3e-177 627.1 489 67.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 5.6e-176 621.7 449 70.6
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.2e-175 620.5 490 67.8
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 1.2e-175 620.5 493 68.0
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 2.1e-175 619.8 435 71.7
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 2.1e-175 619.8 437 72.8
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 2.8e-175 619.4 440 73.9
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 2.8e-175 619.4 483 67.5
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 2.8e-175 619.4 490 67.6
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 6.1e-175 618.2 497 66.6
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 6.1e-175 618.2 498 66.9
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.0e-174 617.5 490 66.3
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.4e-174 617.1 484 68.0
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.3e-174 616.3 464 69.0
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 2.3e-174 616.3 449 71.5
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 4.0e-174 615.5 456 71.1
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 5.2e-174 615.1 498 66.7
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.2e-173 614.0 444 71.8
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 4.4e-173 612.1 422 73.9
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 5.7e-173 611.7 487 66.5
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 7.5e-173 611.3 479 66.4
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.7e-172 610.1 440 70.7
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 2.2e-172 609.8 494 64.8
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 4.9e-172 608.6 483 68.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 6.4e-172 608.2 484 68.0
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.8e-171 606.7 443 70.0
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 2.4e-171 606.3 435 70.1
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 4.1e-171 605.5 474 67.9
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.4e-171 605.1 483 67.3
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 2.0e-170 603.2 481 66.9
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 3.5e-170 602.4 449 69.0
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 1.3e-169 600.5 478 66.9
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 5.0e-169 598.6 445 69.0
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 8.6e-169 597.8 509 63.3
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.1e-168 597.4 453 68.0
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 1.9e-168 596.7 465 66.7
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.5e-168 596.3 490 65.1
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 7.3e-168 594.7 482 65.6
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 9.5e-168 594.3 530 61.1
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 1.6e-167 593.6 460 66.1
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.0e-166 590.9 439 69.7
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.8e-166 590.1 484 64.3
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 2.3e-166 589.7 459 67.1
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 3.1e-166 589.3 451 68.5
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 6.8e-166 588.2 490 63.9
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 8.9e-166 587.8 422 70.9
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 1.2e-165 587.4 471 65.6
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.5e-165 587.0 442 70.1
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.0e-165 586.6 451 67.4
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 2.0e-165 586.6 464 68.5
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 4.4e-165 585.5 495 63.2
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 4.4e-165 585.5 469 65.0
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 7.5e-165 584.7 492 63.8
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.3e-164 583.9 422 70.1
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 1.3e-164 583.9 460 65.4
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.7e-164 583.6 474 66.0
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 2.2e-164 583.2 452 67.3
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 4.9e-164 582.0 448 67.2
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 4.9e-164 582.0 407 73.5
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 4.9e-164 582.0 485 65.2
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 6.4e-164 581.6 435 69.4
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.4e-163 580.5 475 64.2
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 9.2e-163 577.8 475 63.8
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.6e-162 575.5 472 64.0
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 6.0e-162 575.1 475 63.6
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 6.0e-162 575.1 466 65.9
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 2.3e-161 573.2 453 68.4
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.5e-160 570.5 449 67.3
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 1.9e-160 570.1 466 65.9
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 2.1e-159 566.6 410 70.2
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 1.2e-157 560.8 486 63.6
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 4.4e-157 558.9 408 70.3
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 2.2e-156 556.6 461 63.8
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 3.7e-156 555.8 415 69.4
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.9e-155 553.5 392 73.0
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.0e-153 547.7 483 61.5
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 8.6e-153 544.7 381 73.5
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 7.3e-152 541.6 462 63.0
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 6.2e-151 538.5 541 56.2
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 4.0e-150 535.8 452 63.5
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 6.8e-150 535.0 490 60.4
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.9e-147 526.9 367 71.7
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 6.0e-146 521.9 424 64.9
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 7.3e-144 515.0 425 62.4
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 2.3e-137 493.4 373 70.2
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.3e-137 493.4 476 57.6
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 5.1e-137 492.3 409 64.3
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 9.0e-134 481.5 422 58.3
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.7e-132 477.2 447 57.3
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 2.2e-132 476.9 449 60.1
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 8.7e-129 464.9 352 65.3
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.9e-128 463.8 481 54.3
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 7.4e-128 461.8 458 55.5
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 4.5e-125 452.6 353 67.1
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 7.4e-120 435.3 300 72.3
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 2.4e-118 430.3 411 56.4
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 9.6e-112 408.3 337 61.1
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.5e-109 401.0 349 60.7
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 3.8e-108 396.4 457 49.0
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 8.5e-108 395.2 415 51.8
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 1.8e-105 387.5 457 48.6
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.1e-102 378.3 387 53.0
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.6e-101 373.6 426 50.2
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.3e-100 371.3 398 50.3
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 1.2e-98 364.8 289 67.8
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 6.3e-95 352.4 270 66.7
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.9e-92 343.6 257 66.1
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 2.6e-80 303.9 452 42.5
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.6e-77 294.7 329 51.1
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 1.4e-73 281.6 350 47.1
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.1e-70 270.0 293 53.9
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 3.4e-64 250.4 463 36.3
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.9e-59 234.6 308 48.7
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 3.6e-58 230.3 484 32.9
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 1.6e-34 151.8 112 69.6
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 1.3e-31 142.1 127 59.8
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.1e-30 139.0 138 58.0
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.3e-28 132.1 172 44.8
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.5e-27 128.6 182 43.4
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 7.6e-24 116.3 143 53.1
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.2e-22 110.5 208 38.0
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 4.6e-21 107.1 124 54.0
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.3e-18 99.0 100 53.0
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.0e-17 94.0 102 49.0
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.3e-15 89.0 89 52.8
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 4.9e-15 87.0 159 41.5
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 1.0e-12 79.3 67 53.7
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 1.5e-11 75.5 63 57.1
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 9.0e-09 66.2 45 73.3


User provided reference genes

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