Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34855 Striga asiatica HOM05D000122 ORTHO05D000139 5.7e-135 484.2 235 100.0
SGA_v2.0_scaffold205G41707 Striga asiatica HOM05D000122 ORTHO05D000139 2.7e-15 86.7 171 40.9
Migut.H00137 Erythranthe guttata HOM05D000122 ORTHO05D000139 7.8e-15 85.1 87 59.8
Oeu062911.1 Olea europaea HOM05D000122 ORTHO05D000139 6.6e-14 82.0 87 57.5
Rhsim10G0023400 Rhododendron simsii HOM05D000122 ORTHO05D000139 3.6e-12 76.3 87 54.0
Rhsim10G0023800 Rhododendron simsii HOM05D000122 ORTHO05D000139 3.6e-12 76.3 87 54.0
Lju41A33G83 Lonicera japonica HOM05D000122 ORTHO05D000139 5.2e-11 72.4 88 53.4
CSS0043516 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D000139 6.8e-11 72.0 86 52.3
SalBow1G2086 Salvia bowleyana HOM05D000122 ORTHO05D000139 6.8e-11 72.0 87 51.7
Peaxi162Scf00129g01036 Petunia axillaris HOM05D000122 ORTHO05D000139 1.2e-10 71.2 103 42.7
TAR371G1161 Trochodendron aralioides HOM05D000122 ORTHO05D000139 1.5e-10 70.9 101 46.5
TAR374G0952 Trochodendron aralioides HOM05D000122 ORTHO05D000139 1.5e-10 70.9 101 45.5
Lsat_1_v5_gn_4_181481 Lactuca sativa HOM05D000122 ORTHO05D000139 2.6e-10 70.1 87 51.7
Nitab4.5_0001952g0030 Nicotiana tabacum HOM05D000122 ORTHO05D000139 2.6e-10 70.1 105 44.8
CDE04G3190 Ceratophyllum demersum HOM05D000122 ORTHO05D000139 3.4e-10 69.7 88 50.0
Cc00_g14950 Coffea canephora HOM05D000122 ORTHO05D000139 3.4e-10 69.7 85 52.9
Dinv33506 Davidia involucrata HOM05D000122 ORTHO05D000139 3.4e-10 69.7 87 50.6
CARHR198480 Cardamine hirsuta HOM05D000122 ORTHO05D000139 4.4e-10 69.3 101 42.6
CDE06G0003 Ceratophyllum demersum HOM05D000122 ORTHO05D000139 7.5e-10 68.6 88 48.9
ECA232G2332 Erigeron canadensis HOM05D000122 ORTHO05D000139 7.5e-10 68.6 87 50.6
HanXRQChr09g0265931 Helianthus annuus HOM05D000122 ORTHO05D000139 7.5e-10 68.6 87 50.6
PSO017G4268 Papaver somniferum HOM05D000122 ORTHO05D000139 7.5e-10 68.6 87 47.1
Nitab4.5_0007879g0020 Nicotiana tabacum HOM05D000122 ORTHO05D000139 9.8e-10 68.2 105 43.8
PSO170G2497 Papaver somniferum HOM05D000122 ORTHO05D000139 9.8e-10 68.2 87 47.1
AL6G25640 Arabidopsis lyrata HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
AT5G14870 Arabidopsis thaliana HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
BcaB08g36943 Brassica carinata HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
BcaC04g19005 Brassica carinata HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
A10p23860 Brassica napus HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
C09p62340 Brassica napus HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
BolC9t59071H Brassica oleracea HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
BraA10t44450Z Brassica rapa HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
Carub.0006s1302 Capsella rubella HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
ClCG10G014350 Citrullus lanatus HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 45.5
MELO3C009944.2 Cucumis melo HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 45.5
CsaV3_3G042240 Cucumis sativus L. HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 45.5
Thhalv10012806m.g Eutrema salsugineum HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
Nn2g12592 Nelumbo nucifera HOM05D000122 ORTHO05D000139 1.3e-09 67.8 191 33.5
Sp6g29210 Schrenkiella parvula HOM05D000122 ORTHO05D000139 1.3e-09 67.8 101 41.6
CANSAT64G2997 Cannabis sativa HOM05D000122 ORTHO05D000139 2.9e-09 66.6 101 45.5
DCAR_021677 Daucus carota HOM05D000122 ORTHO05D000139 2.9e-09 66.6 88 52.3
Duzib084G1280 Durio zibethinus HOM05D000122 ORTHO05D000139 3.7e-09 66.2 103 40.8
THA.LOC104821065 Tarenaya hassleriana HOM05D000122 ORTHO05D000139 3.7e-09 66.2 101 42.6
Thecc.03G009200 Theobroma cacao HOM05D000122 ORTHO05D000139 4.9e-09 65.9 103 40.8
GSVIVG01032502001 Vitis vinifera HOM05D000122 ORTHO05D000139 4.9e-09 65.9 85 48.2
CAN.G206.40 Capsicum annuum HOM05D000122 ORTHO05D000139 8.3e-09 65.1 98 42.9
Cpa.g.sc140.41 Carica papaya HOM05D000122 ORTHO05D000139 1.9e-08 63.9 90 46.7
Hma1.2p1_0967F.1_g242280 Hydrangea macrophylla HOM05D000122 ORTHO05D000139 1.9e-08 63.9 87 47.1
Duzib264G0783 Durio zibethinus HOM05D000122 ORTHO05D000139 3.2e-08 63.2 87 48.3
Nn4g22823 Nelumbo nucifera HOM05D000122 ORTHO05D000139 3.2e-08 63.2 101 42.6
Solyc02g086990.4 Solanum lycopersicum HOM05D000122 ORTHO05D000139 5.4e-08 62.4 106 41.5
Sopen02g031760 Solanum pennellii HOM05D000122 ORTHO05D000139 5.4e-08 62.4 106 41.5
QL02p076980 Quercus lobata HOM05D000122 ORTHO05D000139 7.0e-08 62.0 87 44.8
vmacro05813 Vaccinium macrocarpon HOM05D000122 ORTHO05D000139 9.2e-08 61.6 182 34.6
Dinv09160 Davidia involucrata HOM05D000122 ORTHO05D000139 1.2e-07 61.2 83 48.2
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 1.6e-07 60.8 112 42.9
PGSC0003DMG400000529 Solanum tuberosum HOM05D000122 ORTHO05D000139 1.6e-07 60.8 104 38.5
CiPaw.07G211000 Carya illinoinensis HOM05D000122 ORTHO05D000139 2.0e-07 60.5 87 44.8
Lj9A451G94 Lonicera japonica HOM05D000122 ORTHO05D000139 2.0e-07 60.5 110 38.2
Thecc.04G007400 Theobroma cacao HOM05D000122 ORTHO05D000139 2.0e-07 60.5 101 42.6
Eucgr.J02184 Eucalyptus grandis HOM05D000122 ORTHO05D000139 2.7e-07 60.1 87 46.0
MBI19_g00157_MAGBIO Magnolia biondii HOM05D000122 ORTHO05D000139 3.5e-07 59.7 118 38.1
vmacro19371 Vaccinium macrocarpon HOM05D000122 ORTHO05D000139 3.5e-07 59.7 127 37.8
Ah.01g014740 Amaranthus hybridus HOM05D000122 ORTHO05D000139 6.0e-07 58.9 87 47.1
Aqoxy3G00970 Aquilegia oxysepala HOM05D000122 ORTHO05D000139 6.0e-07 58.9 87 43.7
TWI15G0961 Tripterygium wilfordii HOM05D000122 ORTHO05D000139 6.0e-07 58.9 97 41.2
EL10Ac9g22387 Beta vulgaris HOM05D000122 ORTHO05D000139 7.8e-07 58.5 87 48.3
EL10Ac9g22834 Beta vulgaris HOM05D000122 ORTHO05D000139 7.8e-07 58.5 87 48.3
CsaV3_1G001610 Cucumis sativus L. HOM05D000122 ORTHO05D000139 7.8e-07 58.5 87 43.7
TPR.G6324 Trifolium pratense HOM05D000122 ORTHO05D000139 7.8e-07 58.5 87 43.7
HPP92_027720 Vanilla planifolia HOM05D000122 ORTHO05D000139 7.8e-07 58.5 89 44.9
Aqoxy7G03197 Aquilegia oxysepala HOM05D000122 ORTHO05D000139 1.0e-06 58.2 87 42.5
PGR083G1066 Punica granatum HOM05D000122 ORTHO05D000139 1.0e-06 58.2 101 42.6
QL12p025594 Quercus lobata HOM05D000122 ORTHO05D000139 1.0e-06 58.2 101 37.6
Glyma.04G181000 Glycine max HOM05D000122 ORTHO05D000139 1.3e-06 57.8 126 36.5
Rhsim08G0170300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.3e-06 57.8 93 41.9
Sc05g0005180 Simmondsia chinensis HOM05D000122 ORTHO05D000139 1.3e-06 57.8 87 43.7
FvH4_6g50510 Fragaria vesca HOM05D000122 ORTHO05D000139 1.7e-06 57.4 88 45.5
FAN05G2323 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.7e-06 57.4 88 45.5
FAN14G4178 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.7e-06 57.4 88 45.5
PGR102G3232 Punica granatum HOM05D000122 ORTHO05D000139 1.7e-06 57.4 88 42.0
RcHm_v2.0_Chr2g0170931 Rosa chinensis HOM05D000122 ORTHO05D000139 1.7e-06 57.4 85 48.2
VMungo1309G2890 Vigna mungo HOM05D000122 ORTHO05D000139 1.7e-06 57.4 169 31.4
CSS0035897 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D000139 2.3e-06 57.0 93 40.9
MELO3C017101.2 Cucumis melo HOM05D000122 ORTHO05D000139 2.3e-06 57.0 87 42.5
Potri.017G067000 Populus trichocarpa HOM05D000122 ORTHO05D000139 2.3e-06 57.0 100 39.0
Solyc08g069140.4 Solanum lycopersicum HOM05D000122 ORTHO05D000139 2.3e-06 57.0 89 42.7
Sopen08g022780 Solanum pennellii HOM05D000122 ORTHO05D000139 2.3e-06 57.0 89 42.7
PGSC0003DMG400029552 Solanum tuberosum HOM05D000122 ORTHO05D000139 2.3e-06 57.0 89 42.7
FAN15G0343 Fragaria x ananassa HOM05D000122 ORTHO05D000139 3.0e-06 56.6 83 43.4
Sed0011197 Sechium edule HOM05D000122 ORTHO05D000139 3.0e-06 56.6 87 41.4
CARHR238260 Cardamine hirsuta HOM05D000122 ORTHO05D000139 3.9e-06 56.2 99 35.4
CiPaw.03G036700 Carya illinoinensis HOM05D000122 ORTHO05D000139 3.9e-06 56.2 101 40.6
FAN27G1049 Fragaria x ananassa HOM05D000122 ORTHO05D000139 3.9e-06 56.2 83 43.4
Glyma.04G157200 Glycine max HOM05D000122 ORTHO05D000139 3.9e-06 56.2 112 39.3
Potri.013G108200 Populus trichocarpa HOM05D000122 ORTHO05D000139 3.9e-06 56.2 101 37.6
QL02p096040 Quercus lobata HOM05D000122 ORTHO05D000139 3.9e-06 56.2 100 38.0
Sc06g0000210 Simmondsia chinensis HOM05D000122 ORTHO05D000139 3.9e-06 56.2 88 40.9
FvH4_2g36620 Fragaria vesca HOM05D000122 ORTHO05D000139 5.0e-06 55.8 83 43.4
Glyma.06G184000 Glycine max HOM05D000122 ORTHO05D000139 5.0e-06 55.8 87 43.7
Manes.06G029601 Manihot esculenta HOM05D000122 ORTHO05D000139 5.0e-06 55.8 87 41.4
Medtr3g088875 Medicago truncatula HOM05D000122 ORTHO05D000139 5.0e-06 55.8 169 32.5
Prupe.5G176000 Prunus persica HOM05D000122 ORTHO05D000139 5.0e-06 55.8 100 38.0
Sc09g0007240 Simmondsia chinensis HOM05D000122 ORTHO05D000139 5.0e-06 55.8 87 44.8
Medtr7g034605 Medicago truncatula HOM05D000122 ORTHO05D000139 6.6e-06 55.5 104 37.5
AL4G15210 Arabidopsis lyrata HOM05D000122 ORTHO05D000139 8.6e-06 55.1 128 35.2
Ca_16637_v3 Cicer arietinum L. HOM05D000122 ORTHO05D000139 8.6e-06 55.1 87 43.7
ECA240G1776 Erigeron canadensis HOM05D000122 ORTHO05D000139 8.6e-06 55.1 101 39.6
Eucgr.C02008 Eucalyptus grandis HOM05D000122 ORTHO05D000139 8.6e-06 55.1 133 34.6
FAN20G2193 Fragaria x ananassa HOM05D000122 ORTHO05D000139 8.6e-06 55.1 83 42.2
Gohir.A05G360100 Gossypium hirsutum HOM05D000122 ORTHO05D000139 8.6e-06 55.1 87 41.4
Gohir.D04G054200 Gossypium hirsutum HOM05D000122 ORTHO05D000139 8.6e-06 55.1 87 41.4
Gorai.012G060800 Gossypium raimondii HOM05D000122 ORTHO05D000139 8.6e-06 55.1 87 41.4
QL10p012174 Quercus lobata HOM05D000122 ORTHO05D000139 8.6e-06 55.1 100 38.0


User provided reference genes

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