Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold134G34752 Striga asiatica HOM05D030502 ORTHO05D030690 4.1e-51 204.5 111 100.0
SGA_v2.0_scaffold40G15612 Striga asiatica HOM05D030502 ORTHO05D030690 6.2e-39 164.1 121 80.2
SGA_v2.0_scaffold99G29515 Striga asiatica HOM05D030502 ORTHO05D030690 2.1e-18 95.9 62 80.6
SGA_v2.0_scaffold83G26326 Striga asiatica HOM05D001364 ORTHO05D001316 8.7e-17 90.5 54 96.3
SGA_v2.0_scaffold14G07133 Striga asiatica HOM05D001364 ORTHO05D001316 2.5e-16 89.0 55 92.7
SalBow6G4702 Salvia bowleyana HOM05D001364 ORTHO05D001316 7.6e-13 77.4 52 86.5
SGA_v2.0_scaffold145G36028 Striga asiatica HOM05D001364 ORTHO05D001316 1.1e-11 73.6 52 82.7
Cc00_g20090 Coffea canephora HOM05D001364 ORTHO05D001316 2.5e-11 72.4 52 80.8
MSTRG.16598 Avicennia marina HOM05D001364 ORTHO05D001316 7.2e-11 70.9 53 83.0
Nitab4.5_0002067g0020 Nicotiana tabacum HOM05D001364 ORTHO05D001316 7.2e-11 70.9 52 80.8
Oeu019236.3 Olea europaea HOM05D001364 ORTHO05D001316 7.2e-11 70.9 52 76.9
Oeu000252.1 Olea europaea HOM05D001364 ORTHO05D001316 1.6e-10 69.7 52 75.0
Nitab4.5_0000294g0060 Nicotiana tabacum HOM05D001364 ORTHO05D001316 2.1e-10 69.3 52 78.8
Solyc10g047360.2 Solanum lycopersicum HOM05D001364 ORTHO05D001316 2.1e-10 69.3 52 78.8
Sopen10g017670 Solanum pennellii HOM05D001364 ORTHO05D001316 2.1e-10 69.3 52 78.8
PGSC0003DMG400031406 Solanum tuberosum HOM05D001364 ORTHO05D001316 2.1e-10 69.3 52 78.8
CSS0029113 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D017670 6.1e-10 67.8 52 75.0
CANSAT11G2095 Cannabis sativa HOM05D001364 ORTHO05D001316 2.3e-09 65.9 50 76.0
Ca_18362_v3 Cicer arietinum L. HOM05D001364 ORTHO05D001316 3.0e-09 65.5 50 76.0
Sabra17G0038500 Salix brachista HOM05D001364 ORTHO05D001316 3.9e-09 65.1 50 78.0
Sabra17G0043100 Salix brachista HOM05D001364 ORTHO05D001316 3.9e-09 65.1 50 78.0
Gohir.A13G068400 Gossypium hirsutum HOM05D001364 ORTHO05D001316 5.1e-09 64.7 50 76.0
Gohir.D13G053300 Gossypium hirsutum HOM05D001364 ORTHO05D001316 5.1e-09 64.7 50 76.0
Gorai.013G060100 Gossypium raimondii HOM05D001364 ORTHO05D001316 5.1e-09 64.7 50 76.0
Potri.017G051600 Populus trichocarpa HOM05D001364 ORTHO05D001316 5.1e-09 64.7 50 76.0
TPR.G34508 Trifolium pratense HOM05D001364 ORTHO05D001316 6.7e-09 64.3 50 74.0
unitig_46.g18830 Utricularia gibba HOM05D001364 ORTHO05D001316 8.8e-09 63.9 54 66.7
vmacro19943 Vaccinium macrocarpon HOM05D001364 ORTHO05D017670 8.8e-09 63.9 52 71.2
Potri.001G311600 Populus trichocarpa HOM05D001364 ORTHO05D001316 1.1e-08 63.5 50 76.0
VMungo0251G1868 Vigna mungo HOM05D001364 ORTHO05D030690 1.1e-08 63.5 51 70.6
Duzib132G0232 Durio zibethinus HOM05D001364 ORTHO05D001316 1.5e-08 63.2 50 72.0
Medtr4g094260 Medicago truncatula HOM05D001364 ORTHO05D001316 1.5e-08 63.2 50 72.0
SGA_v2.0_scaffold28G12029 Striga asiatica HOM05D030502 ORTHO05D405538 1.5e-08 63.2 61 62.3
Cpa.g.sc209.37 Carica papaya HOM05D001364 ORTHO05D001316 1.9e-08 62.8 50 74.0
Migut.N01081 Erythranthe guttata HOM05D001364 ORTHO05D001316 1.9e-08 62.8 52 67.3
QL09p027326 Quercus lobata HOM05D001364 ORTHO05D001316 1.9e-08 62.8 54 59.3
Solyc03g094090.3 Solanum lycopersicum HOM05D001364 ORTHO05D001316 1.9e-08 62.8 51 68.6
vmacro06855 Vaccinium macrocarpon HOM05D001364 ORTHO05D001316 1.9e-08 62.8 57 63.2
Glyma.08G177900 Glycine max HOM05D001364 ORTHO05D001316 2.5e-08 62.4 50 74.0
Lj4g0012561 Lotus japonicus HOM05D001364 ORTHO05D001316 2.5e-08 62.4 49 75.5
MBI04_g13863_MAGBIO Magnolia biondii HOM05D001364 ORTHO05D001316 2.5e-08 62.4 66 53.0
Gohir.D12G016000 Gossypium hirsutum HOM05D001364 ORTHO05D001316 3.3e-08 62.0 52 73.1
Rhsim05G0104100 Rhododendron simsii HOM05D001364 ORTHO05D001316 3.3e-08 62.0 43 83.7
COL.COLO4_19748 Corchorus olitorius HOM05D001364 ORTHO05D001316 4.3e-08 61.6 50 72.0
Nn1g05423 Nelumbo nucifera HOM05D001364 ORTHO05D001316 4.3e-08 61.6 58 67.2
Cfa005668 Carpinus fangiana HOM05D001364 ORTHO05D001316 5.7e-08 61.2 50 68.0
COL.COLO4_27278 Corchorus olitorius HOM05D001364 ORTHO05D001316 5.7e-08 61.2 50 70.0
Glyma.15G054800 Glycine max HOM05D001364 ORTHO05D001316 5.7e-08 61.2 50 72.0
Sed0007004 Sechium edule HOM05D001364 ORTHO05D001316 5.7e-08 61.2 54 68.5
Sopen05g029970 Solanum pennellii HOM05D001364 ORTHO05D001316 5.7e-08 61.2 60 61.7
Thecc.02G134700 Theobroma cacao HOM05D001364 ORTHO05D001316 5.7e-08 61.2 50 72.0
Phvul.006G205100 Phaseolus vulgaris HOM05D001364 ORTHO05D001316 7.4e-08 60.8 34 94.1
Psat7g056840 Pisum sativum HOM05D001364 ORTHO05D001316 7.4e-08 60.8 54 64.8
PGSC0003DMG400016798 Solanum tuberosum HOM05D001364 ORTHO05D001316 7.4e-08 60.8 60 61.7
arahy.Tifrunner.gnm1.ann1.9QV869 Arachis hypogaea HOM05D001364 ORTHO05D001316 9.7e-08 60.5 50 70.0
arahy.Tifrunner.gnm1.ann1.V2HYM6 Arachis hypogaea HOM05D001364 ORTHO05D001316 9.7e-08 60.5 50 70.0
Ca_17755_v3 Cicer arietinum L. HOM05D001364 ORTHO05D001316 9.7e-08 60.5 58 58.6
Duzib052G1094 Durio zibethinus HOM05D001364 ORTHO05D001316 9.7e-08 60.5 50 70.0
Lalb_Chr05g0217581 Lupinus albus HOM05D001364 ORTHO05D017670 9.7e-08 60.5 54 66.7
AUR62013153 Chenopodium quinoa HOM05D001364 ORTHO05D001316 1.3e-07 60.1 53 67.9
CsaV3_4G009500 Cucumis sativus L. HOM05D001364 ORTHO05D001316 1.3e-07 60.1 50 70.0
ECA234G2412 Erigeron canadensis HOM05D001364 ORTHO05D001316 1.3e-07 60.1 49 71.4
Gorai.008G016100 Gossypium raimondii HOM05D001364 ORTHO05D001316 1.3e-07 60.1 52 71.2
HanXRQChr11g0324731 Helianthus annuus HOM05D001364 ORTHO05D001316 1.3e-07 60.1 58 56.9
Phvul.002G210300 Phaseolus vulgaris HOM05D001364 ORTHO05D001316 1.3e-07 60.1 50 70.0
Psat7g099920 Pisum sativum HOM05D001364 ORTHO05D001316 1.3e-07 60.1 67 56.7
arahy.Tifrunner.gnm1.ann1.A3Z183 Arachis hypogaea HOM05D001364 ORTHO05D001316 1.7e-07 59.7 54 63.0
arahy.Tifrunner.gnm1.ann1.XUU5QY Arachis hypogaea HOM05D001364 ORTHO05D001316 1.7e-07 59.7 54 63.0
CSS0050473 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 1.7e-07 59.7 43 79.1
Lalb_Chr09g0326811 Lupinus albus HOM05D001364 ORTHO05D001316 1.7e-07 59.7 50 68.0
MD00G1037000 Malus domestica HOM05D001364 ORTHO05D001316 1.7e-07 59.7 50 68.0
ATR0665G544 Amborella trichopoda HOM05D001364 ORTHO05D001316 2.2e-07 59.3 54 64.8
DCAR_014649 Daucus carota HOM05D001364 ORTHO05D001316 2.2e-07 59.3 57 56.1
THA.LOC104801673 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 2.2e-07 59.3 50 70.0
THA.LOC104814766 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 2.2e-07 59.3 50 70.0
AUR62010156 Chenopodium quinoa HOM05D001364 ORTHO05D001316 2.8e-07 58.9 53 66.0
ClCG10G009330 Citrullus lanatus HOM05D001364 ORTHO05D001316 2.8e-07 58.9 50 68.0
Lalb_Chr07g0185281 Lupinus albus HOM05D001364 ORTHO05D001316 2.8e-07 58.9 50 68.0
TWI59G1039 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 2.8e-07 58.9 52 69.2
Gohir.A12G015700 Gossypium hirsutum HOM05D001364 ORTHO05D001316 3.7e-07 58.5 34 88.2
Hma1.2p1_0784F.1_g217120 Hydrangea macrophylla HOM05D001364 ORTHO05D001316 3.7e-07 58.5 42 81.0
Hund06372 Selenicereus undatus HOM05D001364 ORTHO05D001316 3.7e-07 58.5 50 68.0
TWI77G0568 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 3.7e-07 58.5 71 54.9
CSS0040896 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 4.8e-07 58.2 54 61.1
CiPaw.06G155000 Carya illinoinensis HOM05D001364 ORTHO05D001316 4.8e-07 58.2 50 62.0
MELO3C024821.2 Cucumis melo HOM05D001364 ORTHO05D001316 4.8e-07 58.2 50 66.0
Dinv21888 Davidia involucrata HOM05D001364 ORTHO05D001316 4.8e-07 58.2 56 58.9
Lsat_1_v5_gn_8_11560 Lactuca sativa HOM05D001364 ORTHO05D001316 4.8e-07 58.2 58 56.9
Nitab4.5_0005282g0030 Nicotiana tabacum HOM05D001364 ORTHO05D001316 4.8e-07 58.2 62 61.3
Nitab4.5_0007452g0020 Nicotiana tabacum HOM05D001364 ORTHO05D001316 4.8e-07 58.2 62 61.3
Sed0021059 Sechium edule HOM05D001364 ORTHO05D001316 4.8e-07 58.2 52 67.3
Manes.10G105142 Manihot esculenta HOM05D001364 ORTHO05D001316 6.3e-07 57.8 50 70.0
Nitab4.5_0000103g0190 Nicotiana tabacum HOM05D001364 ORTHO05D001316 6.3e-07 57.8 52 65.4
Nitab4.5_0003429g0060 Nicotiana tabacum HOM05D001364 ORTHO05D001316 6.3e-07 57.8 52 65.4
PGR142G3309 Punica granatum HOM05D001364 ORTHO05D001316 6.3e-07 57.8 51 68.6
TAR374G0408 Trochodendron aralioides HOM05D001364 ORTHO05D001316 6.3e-07 57.8 83 44.6
EL10Ac9g21506 Beta vulgaris HOM05D001364 ORTHO05D001316 8.2e-07 57.4 53 62.3
Glyma.08G133900 Glycine max HOM05D001364 ORTHO05D001316 8.2e-07 57.4 58 58.6
Hma1.2p1_1014F.1_g247860 Hydrangea macrophylla HOM05D001364 ORTHO05D001316 8.2e-07 57.4 69 52.2
Manes.07G034000 Manihot esculenta HOM05D001364 ORTHO05D001316 8.2e-07 57.4 50 70.0
BolC2t12463H Brassica oleracea HOM05D001364 ORTHO05D001316 1.1e-06 57.0 51 60.8
Rhsim03G0156900 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.1e-06 57.0 41 70.7
Sopen03g024950 Solanum pennellii HOM05D001364 ORTHO05D001316 1.1e-06 57.0 46 69.6
Aa31LG1G16700 Aethionema arabicum HOM05D001364 ORTHO05D001316 1.4e-06 56.6 50 64.0
ECA233G4573 Erigeron canadensis HOM05D001364 ORTHO05D001316 1.4e-06 56.6 58 55.2
Sabra07G0078900 Salix brachista HOM05D001364 ORTHO05D001316 1.4e-06 56.6 50 64.0
Actinidia31760 Actinidia chinensis HOM05D001364 ORTHO05D001316 1.8e-06 56.2 54 57.4
MELO3C017625.2 Cucumis melo HOM05D001364 ORTHO05D001316 1.8e-06 56.2 64 51.6
Carub.0008s2613 Capsella rubella HOM05D001364 ORTHO05D001316 2.4e-06 55.8 47 68.1
Dinv34525 Davidia involucrata HOM05D001364 ORTHO05D001316 2.4e-06 55.8 68 55.9
ECA246G5186 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.4e-06 55.8 40 70.0
Nitab4.5_0002401g0040 Nicotiana tabacum HOM05D001409 ORTHO05D001511 2.4e-06 55.8 48 70.8
TPR.G18549 Trifolium pratense HOM05D001364 ORTHO05D001316 2.4e-06 55.8 54 61.1
TAR310G0002 Trochodendron aralioides HOM05D001364 ORTHO05D001316 2.4e-06 55.8 77 45.5
Actinidia07772 Actinidia chinensis HOM05D001364 ORTHO05D001316 3.1e-06 55.5 54 57.4
Actinidia13624 Actinidia chinensis HOM05D001569 ORTHO05D001316 3.1e-06 55.5 73 49.3
BcaC03g18321 Brassica carinata HOM05D001364 ORTHO05D001316 3.1e-06 55.5 51 58.8
BcaC03g18341 Brassica carinata HOM05D001364 ORTHO05D001316 3.1e-06 55.5 51 58.8
A02p43440 Brassica napus HOM05D001364 ORTHO05D017670 3.1e-06 55.5 51 60.8
A02p43810 Brassica napus HOM05D001364 ORTHO05D001316 3.1e-06 55.5 51 60.8
C02p63970 Brassica napus HOM05D001364 ORTHO05D001316 3.1e-06 55.5 51 58.8
C02p64200 Brassica napus HOM05D001364 ORTHO05D001316 3.1e-06 55.5 51 58.8
BraA02t09269Z Brassica rapa HOM05D001364 ORTHO05D017670 3.1e-06 55.5 51 60.8
Dinv13217 Davidia involucrata HOM05D001364 ORTHO05D001316 3.1e-06 55.5 34 85.3
QL11p022616 Quercus lobata HOM05D001364 ORTHO05D001316 3.1e-06 55.5 39 74.4
Sc16g0000190 Simmondsia chinensis HOM05D001364 ORTHO05D001316 3.1e-06 55.5 50 64.0
TWI39G0945 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 3.1e-06 55.5 57 56.1
AT5G10350 Arabidopsis thaliana HOM05D001364 ORTHO05D001316 4.1e-06 55.1 50 62.0
CANSAT56G1687 Cannabis sativa HOM05D001364 ORTHO05D001316 4.1e-06 55.1 34 82.4
CARHR202950 Cardamine hirsuta HOM05D001364 ORTHO05D001316 4.1e-06 55.1 50 62.0
Thhalv10014635m.g Eutrema salsugineum HOM05D001364 ORTHO05D001316 4.1e-06 55.1 50 60.0
Lsat_1_v5_gn_9_58420 Lactuca sativa HOM05D001364 ORTHO05D001316 4.1e-06 55.1 58 56.9
PSO447G0151 Papaver somniferum HOM05D001364 ORTHO05D001316 4.1e-06 55.1 53 62.3
Pp3c19_20770 Physcomitrium patens HOM05D001364 ORTHO05D001316 4.1e-06 55.1 39 74.4
AL6G20840 Arabidopsis lyrata HOM05D001364 ORTHO05D001316 5.3e-06 54.7 50 62.0
Glyma.10G191400 Glycine max HOM05D001364 ORTHO05D001316 5.3e-06 54.7 59 50.8
Glyma.20G198900 Glycine max HOM05D001364 ORTHO05D001316 5.3e-06 54.7 59 50.8
Gohir.A03G061300 Gossypium hirsutum HOM05D001364 ORTHO05D001316 5.3e-06 54.7 72 45.8
Lalb_Chr06g0169591 Lupinus albus HOM05D001364 ORTHO05D001316 5.3e-06 54.7 36 77.8
Medtr1g073000 Medicago truncatula HOM05D001364 ORTHO05D001316 5.3e-06 54.7 52 61.5
Phvul.L002072 Phaseolus vulgaris HOM05D001364 ORTHO05D001316 5.3e-06 54.7 59 50.8
TAR629G1498 Trochodendron aralioides HOM05D001364 ORTHO05D001316 5.3e-06 54.7 61 54.1
TAR636G1484 Trochodendron aralioides HOM05D001364 ORTHO05D001316 5.3e-06 54.7 61 50.8
AL53U10020 Arabidopsis lyrata HOM05D001364 ORTHO05D001316 6.9e-06 54.3 48 64.6
AL53U10070 Arabidopsis lyrata HOM05D001364 ORTHO05D001316 6.9e-06 54.3 48 64.6
CsaV3_4G004410 Cucumis sativus L. HOM05D001364 ORTHO05D001316 6.9e-06 54.3 62 51.6
Lj4g0023301 Lotus japonicus HOM05D001364 ORTHO05D001316 6.9e-06 54.3 36 77.8
EL10Ac5g12572 Beta vulgaris HOM05D001364 ORTHO05D001316 9.1e-06 53.9 60 51.7
Glyma.05G176400 Glycine max HOM05D001364 ORTHO05D001316 9.1e-06 53.9 54 57.4
HanXRQChr04g0117461 Helianthus annuus HOM05D001364 ORTHO05D001316 9.1e-06 53.9 50 64.0
HanXRQChr08g0223351 Helianthus annuus HOM05D001364 ORTHO05D001316 9.1e-06 53.9 58 55.2
Nn1g00751 Nelumbo nucifera HOM05D001364 ORTHO05D001316 9.1e-06 53.9 52 59.6
Peaxi162Scf01060g00145 Petunia axillaris HOM05D001409 ORTHO05D000406 9.1e-06 53.9 34 82.4
SMO141G0172 Selaginella moellendorffii HOM05D001364 ORTHO05D001316 9.1e-06 53.9 63 57.1
SEGI_18855 Sequoiadendron giganteum HOM05D001364 ORTHO05D001316 9.1e-06 53.9 42 73.8


User provided reference genes

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