Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 0.0e+00 2509.6 1288 100.0
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 0.0e+00 1191.0 1170 59.5
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 0.0e+00 1140.9 756 78.8
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 0.0e+00 1140.9 756 79.0
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 0.0e+00 1133.6 753 78.4
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 0.0e+00 1110.9 761 76.1
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 2.6e-311 1072.4 756 74.7
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.5e-309 1066.6 752 73.3
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 4.8e-308 1061.6 762 72.0
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 8.1e-308 1060.8 745 73.0
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 1.1e-307 1060.4 736 75.1
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 1.1e-307 1060.4 740 73.9
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 4.0e-307 1058.5 752 72.9
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.3e-305 1053.5 759 73.8
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 8.4e-305 1050.8 740 73.4
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 1.9e-304 1049.7 741 72.6
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 2.5e-304 1049.3 742 72.8
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 3.2e-304 1048.9 740 73.0
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 1.2e-303 1047.0 735 72.7
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 3.5e-303 1045.4 757 71.9
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 1.0e-302 1043.9 750 73.5
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 1.8e-302 1043.1 735 73.9
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 2.3e-302 1042.7 759 72.1
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.0e-302 1042.3 752 71.5
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 5.1e-302 1041.6 744 73.5
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 2.8e-300 1035.8 750 73.3
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 3.7e-300 1035.4 750 72.8
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 3.7e-300 1035.4 752 71.4
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 4.8e-300 1035.0 750 72.9
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 6.3e-300 1034.6 747 71.6
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 6.3e-300 1034.6 748 71.4
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 1.4e-299 1033.5 749 71.2
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.8e-299 1033.1 749 71.7
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 2.4e-299 1032.7 738 72.4
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.1e-299 1031.9 757 71.2
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 4.1e-299 1031.9 746 71.4
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 5.3e-299 1031.6 765 70.7
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 5.3e-299 1031.6 742 71.0
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 1.2e-298 1030.4 760 71.1
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 2.6e-298 1029.2 757 71.6
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 3.4e-298 1028.9 740 72.6
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 1.0e-297 1027.3 755 71.5
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 1.3e-297 1026.9 749 71.4
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 2.2e-297 1026.2 740 72.4
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 2.2e-297 1026.2 745 71.4
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 2.9e-297 1025.8 748 72.1
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 5.0e-297 1025.0 786 69.6
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.1e-296 1023.8 745 72.5
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.4e-296 1023.5 744 70.3
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 5.5e-296 1021.5 745 72.3
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 1.2e-295 1020.4 760 70.5
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 2.1e-295 1019.6 756 70.4
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 2.7e-295 1019.2 781 68.9
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 3.5e-295 1018.8 752 69.9
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 4.6e-295 1018.5 749 71.3
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 6.1e-295 1018.1 763 69.5
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 5.1e-294 1015.0 779 67.9
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 6.7e-294 1014.6 694 75.1
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.1e-293 1013.8 751 71.4
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 5.7e-293 1011.5 743 71.2
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 5.7e-293 1011.5 756 70.0
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 7.4e-293 1011.1 747 69.7
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 9.7e-293 1010.7 761 69.6
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.7e-292 1008.8 751 71.1
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 4.8e-292 1008.4 755 71.1
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.4e-291 1006.9 767 67.7
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 3.1e-291 1005.7 756 70.6
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 6.9e-291 1004.6 743 71.1
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 1.5e-290 1003.4 740 69.9
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 4.5e-290 1001.9 745 70.3
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.9e-289 999.2 700 74.6
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 3.2e-288 995.7 740 69.7
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 2.7e-287 992.6 738 70.7
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 4.6e-287 991.9 738 70.7
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 4.6e-287 991.9 792 66.4
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 3.9e-286 988.8 743 70.3
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.1e-286 988.4 745 70.6
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 2.0e-285 986.5 743 70.0
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.5e-285 986.1 754 69.1
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 7.4e-285 984.6 764 67.7
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 2.2e-284 983.0 743 69.9
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 6.1e-279 964.9 706 69.7
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 6.7e-278 961.4 745 69.3
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 1.8e-275 953.4 735 67.1
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 2.6e-274 949.5 710 68.9
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 5.9e-274 948.3 740 67.3
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.3e-273 947.2 657 73.8
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 2.7e-266 922.9 742 65.8
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 1.5e-264 917.1 647 73.4
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 6.3e-260 901.7 738 65.4
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 2.7e-258 896.3 646 72.8
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 1.8e-254 883.6 847 58.0
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 5.8e-237 825.5 741 58.7
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 8.3e-236 821.6 739 60.4
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.7e-226 790.0 545 74.1
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.8e-223 780.0 732 59.3
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.6e-215 753.1 557 70.6
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 9.9e-213 745.0 604 65.6
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 6.4e-212 742.3 561 68.6
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 1.9e-211 740.7 492 76.6
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 6.9e-190 669.1 516 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 6.9e-174 615.9 610 54.6
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 7.7e-173 612.5 688 52.2
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 4.5e-165 586.6 442 66.7
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 1.8e-161 574.7 464 65.9
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.9e-155 554.7 424 66.5
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 5.7e-152 543.1 431 67.5
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.6e-138 497.3 419 61.3
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 2.3e-137 494.6 436 58.0
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 9.8e-136 489.2 438 58.4
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.9e-131 474.9 403 62.0
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 2.1e-122 444.9 372 62.6
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 8.9e-121 439.5 372 62.1
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 4.6e-117 427.2 499 49.7
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 1.8e-97 362.1 226 81.9
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.3e-90 339.3 261 70.9
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 1.6e-90 339.0 208 81.7
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 3.4e-64 251.5 235 58.3
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 8.5e-63 246.9 160 77.5
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 1.5e-59 236.1 166 69.9
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.2e-53 216.5 142 72.5
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.0e-52 213.4 308 42.2
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 4.4e-51 208.0 156 67.9
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.3e-50 206.5 129 80.6
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 1.4e-46 193.0 306 43.8
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 3.2e-46 191.8 117 79.5
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.6e-43 182.2 133 71.4
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 7.0e-41 174.1 95 86.3
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.1e-37 162.5 158 53.2
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 2.3e-36 159.1 132 63.6
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 4.0e-36 158.3 109 76.1
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.6e-35 155.6 141 56.0
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 2.6e-35 155.6 135 61.5
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 4.8e-34 151.4 294 35.4
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 6.1e-29 134.4 81 76.5
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 9.8e-27 127.1 113 57.5
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 1.3e-23 116.7 125 51.2
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 3.8e-23 115.2 157 43.9
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 2.1e-21 109.4 134 47.0
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.4e-17 96.7 57 77.2
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 1.8e-17 96.3 72 66.7
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.6e-16 93.2 57 73.7
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 1.0e-15 90.5 137 46.7
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 2.3e-15 89.4 53 83.0
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 3.3e-14 85.5 81 54.3
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 3.6e-13 82.0 52 75.0
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 8.9e-12 77.4 52 71.2
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 2.6e-11 75.9 75 54.7
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 2.9e-10 72.4 44 77.3
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.5e-08 65.5 36 88.9
SGA_v2.0_scaffold257G45676 Striga asiatica HOM05D004674 ORTHO05D051422 5.6e-06 58.2 87 40.2


User provided reference genes

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