Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 0.0e+00 1646.3 841 100.0
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 0.0e+00 1111.7 834 70.4
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 6.3e-309 1063.9 829 69.5
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 4.8e-301 1037.7 840 67.4
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 2.2e-269 932.6 833 61.1
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 2.4e-268 929.1 833 60.9
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 7.3e-265 917.5 880 57.5
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.2e-261 906.0 797 63.2
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.0e-258 897.1 841 60.2
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 9.9e-254 880.6 847 59.1
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.4e-252 876.7 845 58.7
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 1.2e-251 873.6 838 58.2
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 1.0e-250 870.5 841 59.0
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 1.5e-249 866.7 845 58.6
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.9e-249 866.3 843 58.4
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 5.6e-249 864.8 841 57.3
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.2e-248 863.6 838 57.4
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.1e-248 862.8 840 57.1
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 4.7e-248 861.7 839 57.8
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 6.2e-248 861.3 845 58.1
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 6.2e-248 861.3 853 57.8
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.2e-248 861.3 842 58.3
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 3.1e-247 859.0 834 58.0
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 2.6e-246 855.9 838 57.4
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.7e-243 845.9 842 58.8
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.9e-241 839.7 844 56.5
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.9e-241 839.7 822 57.1
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 3.3e-241 839.0 834 57.2
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.3e-241 839.0 842 57.1
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 1.2e-240 837.0 839 56.7
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.8e-239 833.2 731 62.5
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.0e-239 832.0 842 57.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 4.0e-239 832.0 831 57.4
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.2e-237 826.2 846 56.4
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.2e-237 826.2 838 56.3
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.8e-237 825.5 831 56.8
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.7e-235 819.3 839 55.9
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.0e-234 817.4 846 55.7
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 2.3e-234 816.2 859 55.6
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 5.1e-234 815.1 817 56.7
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.5e-233 812.8 845 56.1
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 2.5e-233 812.8 830 57.2
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.6e-232 810.1 855 55.1
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.1e-231 807.4 831 55.8
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.2e-230 803.9 832 55.4
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 2.6e-230 802.7 834 56.4
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 4.2e-228 795.4 818 55.5
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.2e-227 793.9 794 58.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.6e-227 793.5 839 54.9
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 2.5e-225 786.2 836 54.5
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 2.5e-225 786.2 763 58.8
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 7.4e-225 784.6 864 53.7
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 2.8e-224 782.7 836 54.5
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 9.0e-223 777.7 833 54.5
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 7.1e-220 768.1 875 52.6
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.6e-219 766.9 758 57.5
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.3e-218 763.8 832 54.2
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.8e-218 763.5 816 55.1
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 3.1e-215 752.7 987 48.7
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 2.0e-214 750.0 817 53.2
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 3.8e-213 745.7 613 65.4
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.4e-212 743.8 783 54.8
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 3.2e-212 742.7 833 52.8
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 5.5e-212 741.9 836 53.9
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 6.0e-211 738.4 735 58.2
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.3e-210 736.5 771 54.9
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.2e-208 729.9 771 55.8
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 3.7e-208 729.2 764 57.3
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.0e-206 723.4 779 54.2
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 2.2e-205 719.9 829 52.1
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 5.0e-205 718.8 847 50.9
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 8.5e-205 718.0 854 50.7
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 6.1e-203 711.8 767 54.5
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 2.3e-202 709.9 836 51.6
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 8.8e-202 708.0 819 51.9
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.5e-201 706.4 804 52.7
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 4.5e-198 695.7 840 50.7
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 2.5e-196 689.9 831 50.3
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 5.5e-196 688.7 750 54.8
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 3.6e-195 686.0 742 54.0
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 6.1e-195 685.3 700 57.9
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.0e-194 684.5 770 53.0
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 3.3e-193 679.5 831 49.0
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 2.8e-192 676.4 830 49.0
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 3.7e-192 676.0 472 74.2
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 1.8e-191 673.7 828 50.1
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 2.4e-191 673.3 825 49.7
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 2.4e-191 673.3 817 49.8
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 3.4e-190 669.5 1054 42.5
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.3e-189 667.5 822 50.2
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 4.7e-187 659.1 837 49.6
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 6.1e-187 658.7 840 49.0
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.0e-186 657.9 545 64.6
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.0e-185 653.7 822 47.0
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 2.0e-185 653.7 566 63.1
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.8e-184 649.0 823 47.4
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.4e-183 647.5 682 54.8
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 2.4e-183 646.7 687 54.4
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 7.7e-182 641.7 837 48.6
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 1.7e-181 640.6 685 54.0
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 5.0e-181 639.0 694 53.5
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.6e-171 607.4 412 74.3
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 3.0e-170 603.2 747 47.4
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 4.4e-169 599.4 420 71.9
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.1e-167 594.7 846 45.4
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.4e-167 594.3 747 46.9
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 2.8e-163 580.1 828 44.9
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 5.2e-162 575.9 835 45.1
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-157 561.2 655 53.0
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.2e-155 554.7 365 74.2
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 4.7e-155 552.7 365 74.5
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.8e-154 550.8 350 76.6
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 7.0e-151 538.9 365 72.6
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 3.1e-146 523.5 350 73.1
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 4.9e-144 516.2 1003 38.4
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.3e-141 508.1 457 59.1
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.3e-141 508.1 306 82.7
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 2.8e-139 500.4 367 67.6
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.5e-137 494.6 684 46.9
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 2.0e-137 494.2 391 63.9
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.6e-134 484.6 511 52.8
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.3e-133 481.5 761 43.2
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.2e-131 474.9 359 64.6
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 4.0e-130 469.9 386 62.2
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 6.8e-130 469.2 413 61.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 3.3e-124 450.3 483 52.2
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 2.4e-122 444.1 329 69.3
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 4.0e-122 443.4 476 55.7
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 7.1e-119 432.6 374 61.2
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.9e-116 424.5 435 52.2
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 3.4e-113 413.7 285 71.2
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 5.4e-111 406.4 434 52.1
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.1e-111 406.0 656 42.8
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.3e-108 396.7 591 41.5
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.4e-106 391.0 543 44.6
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 5.3e-106 389.8 442 47.5
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 9.9e-105 385.6 453 48.6
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 2.5e-100 370.9 466 49.8
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.3e-96 358.6 443 47.2
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.8e-93 348.2 247 73.7
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 7.4e-92 342.8 198 84.8
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 7.2e-87 326.2 756 34.4
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 7.4e-84 316.2 578 43.8
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 5.9e-81 306.6 478 46.0
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.5e-80 303.1 610 35.4
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 3.9e-77 293.9 322 47.2
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 2.0e-76 291.6 473 41.9
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 4.8e-75 287.0 475 42.7
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.4e-74 285.4 275 57.1
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.8e-74 285.0 424 44.3
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.0e-72 279.3 191 72.8
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 3.5e-65 254.2 362 47.0
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.5e-65 253.8 183 66.7
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 2.0e-60 238.4 319 41.7
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 2.6e-60 238.0 434 34.3
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.4e-58 232.3 362 43.9
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 4.1e-58 230.7 481 39.1
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 2.9e-56 224.6 191 61.8
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 4.7e-54 217.2 181 60.8
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.6e-49 202.2 153 62.7
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 3.5e-49 201.1 149 65.1
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 5.0e-48 197.2 472 40.0
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.0e-44 185.3 107 86.0
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 3.4e-44 184.5 400 33.0
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 3.1e-37 161.4 470 33.0
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 8.3e-35 153.3 91 81.3
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 7.3e-31 140.2 709 28.9
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 1.5e-23 115.9 168 44.0
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.1e-21 108.2 63 81.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 6.8e-21 107.1 133 51.1
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 6.8e-21 107.1 65 78.5
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.5e-20 105.9 66 77.3
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 3.5e-17 94.7 71 67.6
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.1e-13 83.2 58 63.8
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 2.4e-13 82.0 226 32.3
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 1.1e-10 73.2 52 69.2
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 1.4e-10 72.8 60 61.7
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.0e-08 66.6 51 68.6
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.1e-08 64.3 41 80.5
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 4.3e-07 61.2 53 58.5
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.3e-07 60.5 39 76.9


User provided reference genes

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