Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 3.7e-285 984.2 497 100.0
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 5.2e-178 628.2 506 66.8
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.5e-172 610.1 501 66.1
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 2.8e-171 605.9 503 65.2
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 2.3e-141 506.5 447 62.4
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 3.0e-141 506.1 445 62.0
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 5.1e-141 505.4 441 62.4
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 1.9e-140 503.4 452 61.7
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 3.3e-140 502.7 448 61.2
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.3e-139 500.7 440 61.8
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 1.8e-138 496.9 491 57.0
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 6.9e-138 495.0 444 60.4
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 2.6e-137 493.0 460 59.8
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 2.9e-136 489.6 408 66.2
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 2.9e-136 489.6 435 61.8
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 2.9e-136 489.6 435 61.6
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 3.8e-136 489.2 542 55.0
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 1.9e-135 486.9 477 58.5
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 9.3e-135 484.6 408 65.0
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 4.6e-134 482.3 497 55.9
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 6.0e-134 481.9 541 53.0
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 6.0e-134 481.9 442 60.6
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 3.0e-133 479.6 489 56.4
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 1.1e-132 477.6 428 61.9
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 5.6e-132 475.3 482 57.1
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 9.6e-132 474.6 500 54.6
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.3e-131 474.2 479 58.9
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.6e-131 473.8 479 56.6
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 1.1e-130 471.1 400 62.5
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 1.4e-130 470.7 481 56.8
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 1.2e-129 467.6 468 57.9
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 2.0e-129 466.8 464 56.0
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 2.0e-129 466.8 410 61.7
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 5.8e-129 465.3 551 52.3
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.0e-128 464.5 468 56.6
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 2.2e-128 463.4 453 58.9
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 6.5e-128 461.8 348 69.0
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 1.1e-127 461.1 458 57.4
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 1.9e-127 460.3 409 61.9
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 1.9e-127 460.3 399 59.6
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 4.2e-127 459.1 548 52.0
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 1.6e-126 457.2 339 67.3
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 2.1e-126 456.8 549 51.9
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 3.5e-126 456.1 493 54.4
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 1.0e-125 454.5 393 62.3
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 1.0e-125 454.5 418 60.8
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 2.3e-125 453.4 410 60.2
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 6.7e-125 451.8 539 50.6
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 6.7e-125 451.8 463 56.4
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 8.7e-125 451.4 442 56.8
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 1.5e-124 450.7 409 59.9
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 2.5e-124 449.9 501 52.3
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 3.3e-124 449.5 341 69.2
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.7e-124 448.7 343 65.3
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.4e-122 444.1 436 55.3
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 1.4e-122 444.1 333 68.5
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.1e-122 442.6 434 55.8
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 5.3e-122 442.2 404 59.4
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 9.0e-122 441.4 479 51.8
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.0e-121 440.3 343 64.7
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 4.5e-121 439.1 397 59.2
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.9e-121 438.7 338 65.1
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 1.7e-120 437.2 383 61.1
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 5.0e-120 435.6 534 49.4
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 5.0e-120 435.6 461 54.0
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.1e-119 434.5 335 67.5
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 2.5e-119 433.3 335 65.7
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.6e-118 430.6 489 52.4
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 1.6e-118 430.6 406 59.1
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 7.9e-118 428.3 344 64.0
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 7.9e-118 428.3 343 63.3
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.0e-117 427.9 344 64.0
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 1.0e-117 427.9 399 57.9
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 1.8e-117 427.2 386 60.1
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 1.1e-116 424.5 472 51.9
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 1.9e-116 423.7 428 55.8
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 1.9e-116 423.7 428 55.8
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 4.3e-116 422.5 436 54.8
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 5.7e-116 422.2 424 55.9
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 9.7e-116 421.4 416 55.8
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 2.2e-115 420.2 564 45.4
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 1.4e-114 417.5 563 46.2
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 2.4e-114 416.8 306 69.9
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 4.1e-114 416.0 300 71.0
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 3.8e-112 409.5 344 61.9
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 7.2e-111 405.2 483 50.7
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.1e-108 397.9 392 55.6
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 9.7e-108 394.8 414 53.4
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 8.2e-107 391.7 311 66.9
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 4.5e-105 386.0 475 48.6
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 1.7e-104 384.0 476 49.2
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 6.5e-104 382.1 275 72.4
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 6.5e-104 382.1 275 72.4
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 1.1e-103 381.3 291 70.1
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 1.1e-103 381.3 275 72.0
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 2.7e-89 333.6 247 71.3
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 2.0e-76 290.8 444 41.7
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 5.4e-74 282.7 278 53.2
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 3.8e-72 276.6 265 55.8
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 5.2e-69 266.2 419 40.3
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 9.8e-68 261.9 176 72.7
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 1.9e-55 221.1 184 65.2
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 7.3e-55 219.2 219 58.9
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 1.2e-52 211.8 320 41.2
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 1.6e-49 201.4 276 44.2
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 6.0e-49 199.5 193 57.0
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 3.0e-48 197.2 296 40.5
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 1.2e-46 191.8 156 65.4
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.4e-44 183.3 493 32.3
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 6.2e-38 162.9 286 38.8
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 1.3e-32 145.2 134 50.7
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 7.6e-28 129.4 283 36.7
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 1.3e-24 118.6 285 33.3
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 2.3e-16 91.3 227 32.6
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 8.7e-16 89.4 83 55.4
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.8e-13 81.6 74 50.0
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.8e-13 81.6 74 50.0
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 3.1e-13 80.9 74 48.6
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 9.0e-13 79.3 78 53.8
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 2.0e-12 78.2 71 49.3
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 2.0e-12 78.2 68 55.9
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 1.0e-11 75.9 68 54.4
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.1e-10 72.4 73 45.2
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.1e-10 72.4 73 45.2
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 1.0e-08 65.9 68 57.4
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.8e-08 65.1 212 30.7
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 2.3e-08 64.7 63 52.4
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 8.7e-08 62.8 212 31.1
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 5.7e-07 60.1 164 34.1
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 7.4e-07 59.7 206 32.0
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 7.4e-07 59.7 167 33.5
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 2.8e-06 57.8 205 31.2
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 3.7e-06 57.4 168 33.3
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 6.3e-06 56.6 168 31.5
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 6.3e-06 56.6 168 33.3
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 6.3e-06 56.6 164 34.1
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 8.2e-06 56.2 206 29.6
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 8.2e-06 56.2 167 32.9


User provided reference genes

Program Settings