Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 3.2e-102 375.2 203 100.0
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 8.7e-39 164.5 180 51.7
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 3.3e-38 162.5 180 50.0
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 5.6e-38 161.8 180 51.1
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 4.0e-36 155.6 180 50.6
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 6.9e-36 154.8 180 48.3
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 9.0e-36 154.5 209 45.5
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 9.0e-36 154.5 209 45.5
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.2e-35 154.1 180 49.4
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.2e-35 154.1 180 49.4
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.0e-34 151.0 311 36.3
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 2.9e-34 149.4 180 48.3
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 4.9e-34 148.7 257 39.3
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 3.9e-31 139.0 338 35.8
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 5.1e-31 138.7 177 48.6
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 2.5e-30 136.3 181 44.8
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 7.4e-30 134.8 181 44.2
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 2.8e-29 132.9 190 40.5
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 3.7e-29 132.5 181 43.6
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 4.8e-29 132.1 190 40.5
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.7e-26 123.6 156 43.6
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.9e-26 122.9 181 42.5
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 5.0e-26 122.1 179 41.9
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 6.5e-26 121.7 179 41.3
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 1.9e-25 120.2 179 41.3
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 3.2e-25 119.4 181 38.7
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 4.2e-25 119.0 173 41.6
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 7.2e-25 118.2 173 41.0
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 7.2e-25 118.2 185 41.1
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 9.3e-25 117.9 181 42.0
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.2e-24 117.5 171 42.1
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.2e-24 117.5 181 39.2
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.6e-24 117.1 183 39.9
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.6e-24 117.1 161 42.2
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.6e-24 117.1 185 39.5
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.7e-24 116.3 181 39.8
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.3e-23 114.0 163 42.9
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.8e-23 113.6 181 39.8
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.3e-23 113.2 212 36.3
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.3e-23 113.2 175 40.0
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.3e-23 113.2 175 40.0
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.0e-23 112.8 181 38.7
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 3.0e-23 112.8 181 38.7
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 5.1e-23 112.1 173 39.9
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 5.1e-23 112.1 181 38.7
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 6.7e-23 111.7 178 39.9
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 6.7e-23 111.7 170 40.0
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 6.7e-23 111.7 170 40.6
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 1.1e-22 110.9 172 41.9
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.9e-22 110.2 181 39.2
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.9e-22 110.2 181 39.8
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 3.3e-22 109.4 181 38.7
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 3.3e-22 109.4 173 40.5
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 5.7e-22 108.6 171 38.6
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 7.4e-22 108.2 181 38.7
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 7.4e-22 108.2 181 37.6
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 1.3e-21 107.5 245 35.1
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.3e-21 107.5 180 38.3
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.6e-21 107.1 171 38.6
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.6e-21 107.1 171 38.6
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 2.2e-21 106.7 171 38.6
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.2e-21 106.7 173 38.7
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.2e-21 106.7 178 38.8
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 2.2e-21 106.7 198 39.4
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.2e-21 106.7 178 39.9
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 2.8e-21 106.3 181 38.1
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 3.7e-21 105.9 181 38.7
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 4.8e-21 105.5 171 38.0
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 4.8e-21 105.5 181 38.1
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 6.3e-21 105.1 173 39.9
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 8.2e-21 104.8 181 38.7
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 8.2e-21 104.8 215 34.9
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 1.1e-20 104.4 181 36.5
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.4e-20 104.0 173 39.9
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 1.8e-20 103.6 171 38.6
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 1.8e-20 103.6 171 38.6
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.8e-20 103.6 171 38.6
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.8e-20 103.6 171 38.6
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 1.8e-20 103.6 171 38.6
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.8e-20 103.6 181 37.6
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 3.1e-20 102.8 171 38.6
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 4.1e-20 102.4 181 37.0
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 5.3e-20 102.1 155 41.3
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 6.9e-20 101.7 155 41.3
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 9.0e-20 101.3 180 36.7
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.0e-20 101.3 173 38.2
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.2e-19 100.9 173 38.2
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-19 100.9 173 38.2
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.2e-19 100.9 181 43.1
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 2.0e-19 100.1 181 37.0
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.0e-19 100.1 173 42.2
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 2.6e-19 99.8 181 36.5
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 3.4e-19 99.4 155 40.6
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 3.4e-19 99.4 173 38.2
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.4e-19 99.4 173 38.2
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 3.4e-19 99.4 181 35.4
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.5e-19 99.0 173 38.2
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 5.9e-19 98.6 181 36.5
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.0e-18 97.8 181 36.5
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 1.0e-18 97.8 181 36.5
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 1.3e-18 97.4 181 35.9
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.7e-18 97.1 181 35.9
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 2.2e-18 96.7 179 36.9
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 5.0e-18 95.5 180 37.8
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 6.5e-18 95.1 157 38.2
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.2e-17 92.8 181 34.3
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 7.2e-17 91.7 153 38.6
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.2e-16 90.9 153 36.6
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 2.7e-16 89.7 181 33.7
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 6.1e-16 88.6 170 36.5
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.3e-15 86.7 210 31.4
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 5.1e-15 85.5 145 40.7
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 6.7e-15 85.1 145 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 8.8e-15 84.7 169 35.5
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 2.0e-14 83.6 174 33.9
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 5.7e-14 82.0 182 33.0
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 9.7e-14 81.3 145 34.5
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 1.3e-13 80.9 168 33.9
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.7e-13 80.5 144 36.8
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.7e-13 80.5 161 35.4
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 4.8e-13 79.0 127 37.8
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.3e-13 78.6 149 36.9
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 6.3e-13 78.6 92 47.8
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.1e-12 77.8 157 33.8
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.1e-12 77.8 149 36.9
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 1.1e-12 77.8 181 33.7
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 4.1e-12 75.9 156 34.6
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 4.1e-12 75.9 122 39.3
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 9.1e-12 74.7 181 32.6
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 9.1e-12 74.7 147 35.4
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 3.4e-11 72.8 137 37.2
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 2.5e-09 66.6 200 29.5
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.2e-09 66.2 72 48.6
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 4.2e-09 65.9 134 35.8
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 9.4e-09 64.7 149 34.2
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-08 64.3 124 37.1
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.7e-08 62.4 110 37.3
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-08 62.0 153 30.1
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 3.0e-07 59.7 76 46.1
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.0e-07 59.7 145 33.1
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 6.7e-07 58.5 76 44.7
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.1e-06 57.8 156 29.5
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 9.7e-06 54.7 81 39.5


User provided reference genes

Program Settings