Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 2251.5 1174 100.0
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1588.9 1184 73.4
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1568.5 1196 72.3
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1470.3 1199 68.6
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1448.7 1211 67.5
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1447.6 1205 67.5
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1439.5 1215 67.4
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1438.7 1207 66.8
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1436.4 1198 66.8
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1434.5 1215 65.5
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1431.8 1195 66.9
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1429.5 1210 66.9
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1419.4 1226 65.3
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1417.1 1199 66.9
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1416.7 1219 65.2
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1412.9 1202 66.8
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1412.1 1227 64.8
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1409.8 1200 66.2
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1407.1 1198 66.4
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1404.0 1209 64.8
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1403.3 1220 65.2
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1401.3 1204 66.4
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1401.0 1219 65.4
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1400.6 1212 64.8
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1399.8 1218 65.1
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1396.7 1198 65.5
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1391.7 1197 65.4
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1390.6 1205 65.1
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1389.0 1207 64.2
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1384.0 1205 65.0
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1380.9 1213 64.1
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1380.5 1199 65.1
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1380.5 1216 64.5
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1378.6 1209 64.3
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1378.2 1211 64.2
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1376.7 1199 65.6
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1376.3 1205 65.6
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1374.4 1196 65.0
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1373.6 1215 64.0
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1370.9 1199 65.3
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1369.4 1201 64.4
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1367.8 1206 64.1
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1365.1 1200 64.7
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1364.0 1216 64.0
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1359.7 1221 62.8
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1357.4 1215 64.1
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1352.4 1211 63.6
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1352.4 1228 62.6
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1348.6 1220 62.9
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1347.4 1211 63.3
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1346.6 1205 63.8
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1345.5 1232 62.4
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1342.4 1213 63.7
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1338.6 1190 63.6
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1332.4 1210 63.2
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1329.3 1210 63.5
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1329.3 1210 63.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1327.0 1176 63.5
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1326.2 1210 63.2
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1325.8 1205 62.9
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1313.9 1213 62.5
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1312.7 1178 63.7
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1310.8 1189 62.5
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1305.4 1165 62.8
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1302.3 1219 61.7
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1302.3 1191 62.6
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1298.5 1191 62.0
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1298.1 1189 62.4
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1295.0 1189 61.9
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1294.6 1205 62.2
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1293.5 1213 62.3
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1282.3 1185 61.3
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1279.6 1208 60.8
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1278.8 1208 60.8
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1277.7 1210 60.4
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1277.7 1208 61.0
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1276.5 1213 60.6
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1275.0 1211 60.6
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1275.0 1210 60.7
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1274.2 1210 60.5
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1266.9 1198 61.4
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1264.2 1200 60.7
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1263.1 1230 59.8
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1244.6 1194 60.1
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1240.3 1222 59.1
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1231.1 1272 56.6
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1161.0 1071 61.9
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1159.8 953 68.0
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1128.6 995 63.7
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 8.0e-312 1074.3 1296 51.0
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.2e-311 1072.0 951 64.7
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 3.1e-298 1028.9 1266 49.7
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 3.1e-298 1028.9 1282 49.1
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.5e-288 994.6 792 67.2
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.0e-285 985.7 1199 50.1
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 1.2e-249 867.5 1446 41.0
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.1e-245 852.8 798 61.3
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 5.4e-234 815.5 670 67.0
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.0e-232 809.7 647 68.3
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.5e-231 807.4 648 68.5
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 1.3e-227 794.3 559 77.3
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.5e-220 770.8 561 74.2
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.7e-219 767.3 561 74.0
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 3.9e-208 729.6 608 65.8
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.9e-203 713.4 590 68.1
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.1e-173 615.1 546 63.7
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 6.1e-169 599.4 569 59.9
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 8.0e-169 599.0 1214 36.9
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 2.0e-164 584.3 538 61.9
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 7.8e-140 502.7 551 55.4
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.6e-132 476.9 486 59.7
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 4.7e-129 466.8 415 61.9
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 1.0e-123 449.1 463 58.7
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.9e-118 430.3 335 70.4
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 3.8e-110 404.1 352 63.1
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.9e-107 394.0 540 47.2
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.1e-97 361.7 402 55.5
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.5e-93 348.2 358 54.5
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 7.1e-93 346.7 1226 26.9
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 7.1e-93 346.7 415 51.8
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.3e-91 342.4 416 54.1
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 1.1e-88 332.8 261 69.0
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 9.0e-88 329.7 1228 28.5
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.3e-78 299.3 288 53.1
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.9e-70 271.6 255 60.0
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.3e-65 256.1 223 65.5
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.2e-62 245.4 188 68.1
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.1e-61 243.0 400 42.8
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 3.2e-61 241.5 144 87.5
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 2.3e-59 235.3 239 57.7
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.2e-58 233.0 400 41.8
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.2e-58 233.0 147 81.6
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 7.5e-58 230.3 400 41.5
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 9.8e-58 229.9 400 41.2
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.8e-51 207.2 220 53.6
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.0e-43 183.3 616 28.4
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.8e-43 182.6 106 90.6
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-42 179.5 113 84.1
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.7e-41 174.9 111 83.8
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 3.7e-41 174.9 112 82.1
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 6.4e-41 174.1 113 82.3
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 1.6e-39 169.5 113 80.5
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 1.0e-38 166.8 103 85.4
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.6e-36 159.5 96 82.3
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 4.7e-36 157.9 109 79.8
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 8.0e-36 157.1 184 51.1
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.7e-33 148.3 99 80.8
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.6e-31 142.9 81 88.9
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.0e-31 142.5 92 82.6
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.7e-31 142.1 122 62.3
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.3e-30 139.8 135 52.6
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 3.5e-23 115.2 85 68.2
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.1e-21 110.2 91 62.6
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 4.3e-21 108.2 75 74.7
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.2e-20 106.7 75 73.3
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 1.6e-20 106.3 72 77.8
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 8.1e-20 104.0 174 46.6
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 3.9e-14 85.1 91 58.2
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 5.1e-06 58.2 50 60.0


User provided reference genes

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