Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 0.0e+00 1133.2 631 100.0
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.5e-193 679.5 674 64.8
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 8.6e-186 654.4 683 63.7
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 9.9e-182 641.0 675 62.2
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 2.7e-171 606.3 636 60.8
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 6.0e-171 605.1 678 60.6
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 7.3e-169 598.2 672 61.0
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.7e-162 577.0 673 57.9
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 4.3e-161 572.4 680 57.9
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 4.0e-159 565.8 589 61.0
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 5.8e-158 562.0 684 55.7
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 3.2e-156 556.2 672 56.5
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 2.1e-155 553.5 677 56.4
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 7.9e-155 551.6 659 54.2
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 1.3e-149 534.3 676 55.6
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.5e-148 530.0 675 55.1
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 3.2e-148 529.6 677 53.3
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 3.2e-148 529.6 667 54.0
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 4.2e-148 529.3 667 54.4
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 5.1e-146 522.3 678 54.0
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.1e-145 521.2 678 53.2
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 3.3e-145 519.6 670 53.4
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 9.6e-145 518.1 698 52.6
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 3.7e-144 516.2 676 54.4
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 4.8e-144 515.8 678 51.5
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.8e-143 513.8 601 55.4
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 5.3e-143 512.3 681 53.3
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.9e-143 511.9 681 53.5
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-142 511.1 681 53.2
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.4e-142 509.6 570 54.9
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 7.6e-142 508.4 680 54.6
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.9e-141 506.5 721 49.9
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.9e-141 506.5 677 52.0
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 4.6e-139 499.2 677 51.7
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 3.0e-138 496.5 677 54.1
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.9e-137 493.8 516 58.7
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 2.5e-137 493.4 577 56.3
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 2.5e-137 493.4 664 52.4
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 5.7e-137 492.3 545 58.2
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 7.4e-137 491.9 578 54.0
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 9.7e-137 491.5 545 58.0
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 6.3e-136 488.8 606 54.6
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 6.3e-136 488.8 670 53.4
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 8.2e-136 488.4 668 51.3
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 3.1e-135 486.5 679 52.3
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.1e-135 486.5 568 55.3
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 4.1e-135 486.1 541 54.9
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 4.1e-135 486.1 668 51.5
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 9.0e-135 485.0 678 50.3
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 2.6e-134 483.4 665 51.6
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 4.5e-134 482.6 666 51.1
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.4e-132 477.6 675 52.6
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 4.2e-132 476.1 666 51.1
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 9.4e-132 474.9 530 57.7
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 6.1e-131 472.2 665 52.8
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 7.9e-131 471.9 680 52.2
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 7.9e-131 471.9 668 48.5
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 1.4e-130 471.1 534 55.1
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 3.0e-130 469.9 577 51.5
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 2.5e-129 466.8 705 49.2
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 1.3e-128 464.5 576 52.4
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 1.1e-127 461.5 673 51.3
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 3.1e-127 459.9 360 68.3
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 4.5e-126 456.1 675 49.9
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 1.0e-125 454.9 671 47.4
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 2.9e-125 453.4 674 50.9
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.1e-124 451.4 667 45.7
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.1e-124 451.4 592 52.4
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 4.2e-124 449.5 748 44.9
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 7.2e-124 448.7 675 50.5
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.2e-123 448.0 600 51.2
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 3.0e-122 443.4 562 54.3
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 1.5e-121 441.0 679 48.0
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 4.8e-120 436.0 666 48.9
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 1.1e-119 434.9 446 56.7
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 2.0e-118 430.6 543 53.2
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 5.9e-118 429.1 494 55.1
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 7.7e-118 428.7 665 48.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 1.0e-117 428.3 555 52.8
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 1.7e-117 427.6 698 47.3
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 1.5e-113 414.5 675 47.4
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 2.6e-113 413.7 620 47.7
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 9.7e-113 411.8 612 47.9
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 6.3e-112 409.1 555 47.9
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 7.7e-110 402.1 500 49.4
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 5.0e-109 399.4 513 50.7
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 3.2e-108 396.7 488 51.6
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 3.6e-107 393.3 488 52.5
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.2e-102 378.3 541 49.7
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.0e-102 377.5 384 60.7
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 2.7e-102 377.1 494 48.6
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.7e-102 375.6 511 47.7
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 1.7e-101 374.4 362 58.3
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.2e-99 368.2 677 44.6
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 4.0e-98 363.2 696 44.3
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 2.0e-97 360.9 670 44.9
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 4.4e-97 359.8 503 48.9
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 7.0e-95 352.4 679 43.3
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 3.5e-94 350.1 679 43.3
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.3e-93 348.2 685 42.8
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.7e-93 347.8 686 42.9
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 5.5e-92 342.8 683 41.4
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 7.2e-92 342.4 528 45.5
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 9.5e-92 342.0 397 57.4
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-91 340.9 397 57.2
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-91 340.9 397 57.2
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-91 340.9 397 56.9
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 6.1e-91 339.3 508 49.2
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 3.0e-90 337.0 542 45.9
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 7.5e-89 332.4 579 44.2
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.1e-87 328.6 490 46.9
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.5e-84 318.2 567 44.1
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 5.6e-84 316.2 694 41.6
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 6.8e-82 309.3 675 41.0
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 5.0e-77 293.1 329 51.1
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 1.2e-75 288.5 324 50.0
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.3e-72 278.5 326 57.1
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.1e-70 271.2 457 45.3
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.5e-68 265.0 369 48.2
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 1.7e-64 251.5 570 37.2
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 2.4e-63 247.7 498 40.0
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 3.5e-62 243.8 405 41.2
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 3.1e-58 230.7 527 37.2
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 5.4e-55 219.9 224 54.9
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 8.7e-53 212.6 293 45.7
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 9.9e-49 199.1 468 36.3
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 3.8e-48 197.2 235 59.1
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 1.9e-47 194.9 191 60.7
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.7e-45 188.3 169 61.5
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.6e-43 180.6 536 34.9
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 1.6e-35 155.2 126 61.1
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 8.4e-32 142.9 283 41.7
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 9.3e-31 139.4 92 78.3
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 3.3e-28 131.0 332 33.4
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 6.9e-26 123.2 230 31.7
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.9e-23 115.2 350 33.4
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 3.5e-22 110.9 156 55.8
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 7.4e-20 103.2 284 28.2
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 7.7e-17 93.2 62 69.4
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 2.9e-16 91.3 90 52.2
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 9.4e-15 86.3 53 73.6
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 1.6e-14 85.5 136 47.1
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 6.3e-11 73.6 54 68.5
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 4.7e-06 57.4 133 42.1


User provided reference genes

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