Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 2.1e-258 895.2 453 100.0
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 2.6e-216 755.4 473 82.2
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 7.5e-216 753.8 473 81.6
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 2.3e-204 715.7 473 75.9
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 2.3e-204 715.7 473 75.9
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 7.0e-198 694.1 471 74.7
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 1.3e-196 689.9 474 73.8
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 2.3e-196 689.1 475 73.5
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 1.2e-194 683.3 507 70.2
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 1.6e-194 682.9 474 73.0
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 1.4e-193 679.9 471 74.5
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 1.4e-193 679.9 507 72.0
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 2.6e-192 675.6 473 71.9
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 1.3e-191 673.3 471 72.6
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 2.2e-191 672.5 471 72.4
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 3.7e-191 671.8 473 72.1
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 8.3e-191 670.6 471 72.4
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 8.3e-191 670.6 476 73.1
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 1.1e-190 670.2 486 70.6
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.4e-190 669.1 473 71.7
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 4.1e-190 668.3 475 72.0
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 9.2e-190 667.2 471 71.5
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 9.2e-190 667.2 485 71.8
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 1.2e-189 666.8 471 72.2
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 7.8e-189 664.1 500 71.4
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 1.0e-188 663.7 472 71.0
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 1.7e-188 662.9 475 72.2
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 1.1e-187 660.2 471 71.1
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 2.5e-187 659.1 471 70.5
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 7.3e-187 657.5 472 70.6
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 6.2e-186 654.4 473 69.6
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.4e-185 653.3 471 69.6
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 8.9e-185 650.6 471 69.0
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 8.9e-185 650.6 473 69.8
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 1.5e-184 649.8 471 69.2
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.0e-184 649.4 480 70.8
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 2.6e-184 649.0 486 69.8
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 4.4e-184 648.3 473 69.3
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 7.6e-184 647.5 471 70.3
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 1.7e-183 646.4 470 69.8
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 2.9e-183 645.6 471 69.9
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 3.8e-183 645.2 473 69.1
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 4.9e-183 644.8 471 68.6
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 8.4e-183 644.0 470 68.9
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 8.4e-183 644.0 473 68.9
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 1.4e-182 643.3 472 69.1
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 1.9e-182 642.9 471 68.6
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 2.4e-182 642.5 504 67.7
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 5.4e-182 641.3 476 70.4
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 1.2e-181 640.2 473 68.5
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 1.6e-181 639.8 470 68.1
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 1.6e-181 639.8 471 68.6
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 4.6e-181 638.3 473 68.1
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 4.6e-181 638.3 473 68.5
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 6.0e-181 637.9 473 68.3
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.0e-180 637.1 473 69.3
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 1.3e-180 636.7 472 68.6
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 2.3e-180 636.0 500 67.6
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 2.3e-180 636.0 471 68.6
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 5.6e-179 631.3 464 69.0
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 1.2e-178 630.2 474 68.1
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 2.1e-178 629.4 494 65.4
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 2.1e-178 629.4 471 68.4
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.1e-178 629.4 479 68.3
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 1.4e-177 626.7 471 67.9
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 1.8e-177 626.3 478 67.4
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 2.4e-177 625.9 473 66.8
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 9.0e-177 624.0 474 67.1
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 5.8e-176 621.3 479 68.9
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 5.4e-174 614.8 468 65.6
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 1.5e-171 606.7 489 62.6
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 3.8e-167 592.0 514 62.6
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 8.4e-167 590.9 474 65.6
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 1.1e-166 590.5 471 62.2
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 4.2e-166 588.6 471 65.6
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 6.0e-165 584.7 434 69.4
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 7.4e-163 577.8 471 64.3
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 8.1e-162 574.3 459 66.2
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 1.4e-161 573.5 451 65.9
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.8e-161 573.2 471 61.4
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.6e-160 569.3 427 68.1
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 2.9e-159 565.8 418 69.1
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 4.6e-157 558.5 513 60.2
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 6.9e-153 544.7 472 61.7
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 9.0e-153 544.3 471 60.7
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.5e-152 543.5 514 57.6
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 6.5e-151 538.1 473 62.6
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 4.2e-150 535.4 575 53.0
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 2.1e-149 533.1 423 65.0
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 2.1e-149 533.1 403 68.2
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 2.1e-149 533.1 471 60.3
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.8e-148 530.0 534 55.1
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.4e-142 510.4 376 70.7
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 3.4e-136 489.2 505 53.1
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.7e-133 479.6 341 71.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.4e-132 477.2 443 58.7
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 1.3e-130 470.7 474 50.4
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 9.1e-129 464.5 345 68.1
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 7.7e-120 434.9 474 46.4
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 2.7e-117 426.4 316 71.2
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.3e-114 417.5 436 52.3
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 9.4e-110 401.4 506 46.4
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 4.7e-109 399.1 316 65.5
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 7.5e-107 391.7 323 65.3
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 1.7e-106 390.6 473 44.6
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 6.6e-103 378.6 463 44.1
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 5.5e-102 375.6 435 49.7
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 4.1e-97 359.4 463 41.5
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.2e-93 347.8 262 67.2
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 5.2e-92 342.4 288 62.8
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 8.0e-85 318.5 237 68.8
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 4.0e-76 289.7 255 61.6
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 4.3e-70 269.6 242 60.7
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 3.4e-67 260.0 225 61.3
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 8.4e-66 255.4 201 63.7
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 3.5e-64 250.0 174 71.3
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 2.3e-63 247.3 167 74.3
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 3.3e-62 243.4 224 51.3
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 1.2e-59 235.0 305 47.9
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.7e-55 221.1 458 31.0
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 6.9e-52 209.1 471 30.1
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.5e-51 208.0 515 29.7
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 1.6e-48 198.0 341 40.5
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.0e-47 195.3 559 27.9
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.4e-44 184.1 130 70.0
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.0e-36 156.8 97 73.2
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 2.1e-32 144.4 110 69.1
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.3e-31 141.7 103 62.1
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.3e-31 141.7 103 62.1
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.2e-25 120.6 96 57.3
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.4e-19 100.5 118 46.6
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 5.9e-19 99.8 99 50.5
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.9e-18 97.4 58 79.3
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.2e-17 94.0 64 68.8
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 5.5e-17 93.2 58 74.1
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 6.7e-15 86.3 55 69.1
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 4.4e-14 83.6 51 76.5
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.8e-12 78.2 58 58.6
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 8.5e-10 69.3 69 55.1
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.2e-08 65.5 51 66.7
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.6e-08 63.9 51 66.7
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.7e-08 63.5 38 73.7
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 1.0e-07 62.4 108 36.1
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 8.8e-07 59.3 49 63.3
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.1e-06 58.9 49 63.3
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 4.4e-06 57.0 172 29.1


User provided reference genes

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