Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 3.7e-166 589.3 295 100.0
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 1.5e-119 434.5 298 74.5
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 2.5e-114 417.2 296 73.6
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 3.3e-106 390.2 297 71.0
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 6.9e-96 355.9 244 73.8
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.8e-91 341.3 304 62.2
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 5.1e-91 339.7 304 62.2
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 1.9e-90 337.8 245 70.2
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 2.8e-89 334.0 259 66.0
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 2.8e-89 334.0 298 62.4
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 1.4e-88 331.6 309 60.2
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 2.0e-87 327.8 251 67.3
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 3.4e-87 327.0 241 70.5
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 3.4e-87 327.0 299 60.9
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 2.9e-86 323.9 240 69.6
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 3.8e-86 323.6 312 58.3
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 3.8e-86 323.6 241 69.3
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 5.0e-86 323.2 303 59.1
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 4.2e-85 320.1 295 60.3
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 5.5e-85 319.7 243 68.3
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 2.7e-84 317.4 295 60.3
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 2.3e-83 314.3 307 56.7
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 8.8e-83 312.4 240 67.1
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 1.1e-82 312.0 254 64.6
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 1.1e-82 312.0 327 54.7
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 1.5e-82 311.6 238 67.2
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 2.0e-82 311.2 307 55.4
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 2.0e-82 311.2 297 58.2
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 2.0e-82 311.2 264 63.3
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 3.3e-82 310.5 303 59.7
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 1.3e-81 308.5 235 67.7
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 1.7e-81 308.1 258 63.2
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.7e-81 308.1 250 64.0
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 2.2e-81 307.8 307 57.3
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 2.8e-81 307.4 309 57.3
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 2.8e-81 307.4 286 60.1
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 4.8e-81 306.6 309 57.3
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 6.3e-81 306.2 300 57.7
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 1.4e-80 305.1 311 56.9
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 1.4e-80 305.1 242 63.6
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.8e-80 304.7 289 58.8
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 1.8e-80 304.7 242 65.7
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 2.4e-80 304.3 305 57.4
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 4.1e-80 303.5 300 57.3
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 4.1e-80 303.5 304 57.2
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 6.9e-80 302.8 244 66.8
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 9.1e-80 302.4 244 66.8
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 9.1e-80 302.4 242 62.8
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 9.1e-80 302.4 254 62.2
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.2e-79 302.0 306 52.9
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.5e-79 301.6 302 56.0
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.5e-79 301.6 302 56.0
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.6e-79 300.8 244 66.4
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 4.5e-79 300.1 256 60.9
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 5.9e-79 299.7 247 63.6
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 5.9e-79 299.7 244 63.1
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.3e-78 298.5 249 61.4
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 1.3e-78 298.5 305 56.4
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.3e-78 298.5 231 67.5
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 2.9e-78 297.4 245 64.1
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 2.9e-78 297.4 244 64.3
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 3.8e-78 297.0 297 57.6
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 5.0e-78 296.6 241 64.3
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 6.5e-78 296.2 247 64.4
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 6.5e-78 296.2 300 55.7
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 8.5e-78 295.8 232 64.7
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 1.1e-77 295.4 294 55.4
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 1.4e-77 295.0 239 64.9
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 2.5e-77 294.3 291 55.3
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 4.2e-77 293.5 264 59.1
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 4.2e-77 293.5 291 57.7
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 1.2e-76 292.0 237 63.7
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.2e-76 292.0 239 63.2
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 1.2e-76 292.0 309 54.7
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 4.7e-76 290.0 251 62.2
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 1.4e-75 288.5 231 63.6
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 1.8e-75 288.1 234 61.5
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 2.3e-75 287.7 304 52.6
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 2.3e-75 287.7 304 52.6
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 3.0e-75 287.3 298 54.7
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 8.8e-75 285.8 233 62.7
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 1.1e-74 285.4 305 52.8
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 1.1e-74 285.4 305 52.8
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 1.1e-74 285.4 305 52.8
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 2.0e-74 284.6 235 64.3
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 2.6e-74 284.3 206 68.4
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 5.7e-74 283.1 233 63.1
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 5.7e-74 283.1 232 62.9
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 5.7e-74 283.1 230 63.0
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 9.7e-74 282.3 267 56.9
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 2.2e-73 281.2 284 55.6
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 6.3e-73 279.6 313 50.5
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 2.4e-72 277.7 300 54.0
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 3.1e-72 277.3 304 50.0
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 5.3e-72 276.6 299 52.5
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.7e-70 271.6 304 50.0
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 6.5e-70 269.6 239 61.1
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 9.7e-66 255.8 297 52.9
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 3.8e-62 243.8 158 74.7
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.2e-50 205.7 169 67.5
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 1.4e-48 198.7 228 50.9
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 3.8e-46 190.7 236 46.6
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 6.1e-44 183.3 153 59.5
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 4.1e-32 144.1 196 42.3
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.3e-30 139.0 202 38.6
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.7e-22 112.1 204 33.3
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 1.1e-21 109.4 240 32.9
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 9.5e-21 106.3 205 31.2
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 2.1e-20 105.1 237 33.8
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 4.0e-19 100.9 172 33.7
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.7e-17 95.5 54 85.2
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 9.2e-16 89.7 53 81.1
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 9.2e-16 89.7 54 77.8
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 7.8e-15 86.7 54 75.9
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 7.8e-15 86.7 54 75.9
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 5.6e-13 80.5 62 66.1
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 3.4e-10 71.2 62 53.2
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 9.9e-10 69.7 50 64.0
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 1.1e-08 66.2 54 55.6
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 1.9e-08 65.5 214 26.2
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 5.4e-08 63.9 50 54.0
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.1e-07 62.0 46 65.2
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 2.7e-07 61.6 44 61.4
SalBow6G5562 Salvia bowleyana HOM05D001779 ORTHO05D001753 2.3e-06 58.5 120 34.2
PSO210G0586 Papaver somniferum HOM05D001779 ORTHO05D001753 3.0e-06 58.2 140 31.4
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 3.9e-06 57.8 36 75.0
SGA_v2.0_scaffold123G33423 Striga asiatica HOM05D001779 ORTHO05D001753 3.9e-06 57.8 127 29.1
Sp3g05350 Schrenkiella parvula HOM05D001779 ORTHO05D001753 6.6e-06 57.0 126 31.0
EL10Ac3g06265 Beta vulgaris HOM05D001779 ORTHO05D001753 8.7e-06 56.6 149 28.2
HPP92_008353 Vanilla planifolia HOM05D006705 ORTHO05D008179 8.7e-06 56.6 46 52.2


User provided reference genes

Program Settings