Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold104G30258 Striga asiatica HOM05D005082 ORTHO05D006474 3.4e-86 321.6 162 100.0
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 4.2e-60 235.0 150 84.0
Migut.B00003 Erythranthe guttata HOM05D005082 ORTHO05D006474 5.7e-49 198.0 150 70.0
MSTRG.16959 Avicennia marina HOM05D005082 ORTHO05D006474 1.3e-48 196.8 148 69.6
GSVIVG01023855001 Vitis vinifera HOM05D005082 ORTHO05D006474 8.2e-48 194.1 145 67.6
Dinv14185 Davidia involucrata HOM05D005082 ORTHO05D006474 9.0e-47 190.7 145 66.2
TAR628G0288 Trochodendron aralioides HOM05D005082 ORTHO05D006474 9.0e-47 190.7 145 66.2
Cpa.g.c29182.1 Carica papaya HOM05D005082 ORTHO05D006474 1.5e-46 189.9 144 66.7
Oeu006114.1 Olea europaea HOM05D005082 ORTHO05D006474 1.5e-46 189.9 148 64.9
THA.LOC104800058 Tarenaya hassleriana HOM05D005082 ORTHO05D006474 2.6e-46 189.1 144 65.3
QL11p056821 Quercus lobata HOM05D005082 ORTHO05D006474 7.7e-46 187.6 144 65.3
Atru.BG.54.p Acer truncatum HOM05D005082 ORTHO05D006474 1.7e-45 186.4 144 65.3
MD10G1011800 Malus domestica HOM05D005082 ORTHO05D006474 2.2e-45 186.0 148 64.9
MD05G1011800 Malus domestica HOM05D005082 ORTHO05D006474 3.8e-45 185.3 148 64.2
AT5G64050 Arabidopsis thaliana HOM05D005082 ORTHO05D006474 5.0e-45 184.9 148 62.2
PSO210G0895 Papaver somniferum HOM05D005082 ORTHO05D006474 5.0e-45 184.9 144 63.9
AL8G41310 Arabidopsis lyrata HOM05D005082 ORTHO05D006474 6.5e-45 184.5 148 61.5
CiPaw.05G095000 Carya illinoinensis HOM05D005082 ORTHO05D006474 6.5e-45 184.5 145 64.1
Dinv41859 Davidia involucrata HOM05D005082 ORTHO05D006474 8.5e-45 184.1 138 65.9
ATR0605G166 Amborella trichopoda HOM05D005082 ORTHO05D006474 1.1e-44 183.7 145 62.8
PSO675G0919 Papaver somniferum HOM05D005082 ORTHO05D006474 1.4e-44 183.3 144 63.2
Manes.02G091600 Manihot esculenta HOM05D005082 ORTHO05D006474 1.9e-44 183.0 148 60.8
Eucgr.H05005 Eucalyptus grandis HOM05D005082 ORTHO05D006474 2.5e-44 182.6 145 62.8
Lj9C409G6 Lonicera japonica HOM05D005082 ORTHO05D006474 2.5e-44 182.6 141 67.4
PGR042G3506 Punica granatum HOM05D005082 ORTHO05D006474 2.5e-44 182.6 143 64.3
Duzib132G0508 Durio zibethinus HOM05D005082 ORTHO05D006474 3.2e-44 182.2 144 63.9
Prupe.8G016800 Prunus persica HOM05D005082 ORTHO05D006474 3.2e-44 182.2 148 63.5
CARHR277960 Cardamine hirsuta HOM05D005082 ORTHO05D006474 5.5e-44 181.4 148 61.5
Sp2g27120 Schrenkiella parvula HOM05D005082 ORTHO05D006474 7.2e-44 181.0 148 61.5
TWI59G1375 Tripterygium wilfordii HOM05D005082 ORTHO05D006474 1.2e-43 180.3 147 61.2
Gohir.A01G011600 Gossypium hirsutum HOM05D005082 ORTHO05D006474 2.1e-43 179.5 144 62.5
Gorai.002G014600 Gossypium raimondii HOM05D005082 ORTHO05D006474 2.1e-43 179.5 145 62.1
Rhsim04G0008200 Rhododendron simsii HOM05D005082 ORTHO05D006474 2.7e-43 179.1 143 63.6
Thecc.02G148100 Theobroma cacao HOM05D005082 ORTHO05D006474 2.7e-43 179.1 144 63.9
A06p30760 Brassica napus HOM05D005082 ORTHO05D006474 3.6e-43 178.7 148 61.5
BraA06t26018Z Brassica rapa HOM05D005082 ORTHO05D006474 3.6e-43 178.7 148 61.5
Carub.0008s2483 Capsella rubella HOM05D005082 ORTHO05D006474 3.6e-43 178.7 148 60.1
Ciclev10028098m.g Citrus clementina HOM05D005082 ORTHO05D006474 3.6e-43 178.7 144 63.2
Lj5C170T16 Lonicera japonica HOM05D005082 ORTHO05D006474 3.6e-43 178.7 145 62.1
BcaC01g02661 Brassica carinata HOM05D005082 ORTHO05D006474 4.6e-43 178.3 148 61.5
C03p62220 Brassica napus HOM05D005082 ORTHO05D006474 4.6e-43 178.3 148 61.5
Zm00001eb208250 Zea mays HOM05D005082 ORTHO05D006474 4.6e-43 178.3 148 60.1
Aqoxy6G02995 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 6.1e-43 177.9 145 63.4
Duzib248G1564 Durio zibethinus HOM05D005082 ORTHO05D006474 6.1e-43 177.9 144 63.9
Thhalv10003868m.g Eutrema salsugineum HOM05D005082 ORTHO05D006474 6.1e-43 177.9 144 61.8
Gohir.D01G012800 Gossypium hirsutum HOM05D005082 ORTHO05D006474 1.0e-42 177.2 144 61.8
Cfa005396 Carpinus fangiana HOM05D005082 ORTHO05D006474 1.4e-42 176.8 145 62.8
ClCG02G003240 Citrullus lanatus HOM05D005082 ORTHO05D006474 1.4e-42 176.8 145 60.0
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 1.4e-42 176.8 148 61.5
Glyma.03G097900 Glycine max HOM05D005082 ORTHO05D006474 1.8e-42 176.4 144 63.2
Nitab4.5_0001220g0040 Nicotiana tabacum HOM05D005082 ORTHO05D006474 1.8e-42 176.4 144 63.2
BolC3t18485H Brassica oleracea HOM05D005082 ORTHO05D006474 2.3e-42 176.0 148 60.8
MELO3C015693.2 Cucumis melo HOM05D005082 ORTHO05D006474 3.9e-42 175.3 145 58.6
CsaV3_7G002150 Cucumis sativus L. HOM05D005082 ORTHO05D006474 3.9e-42 175.3 145 59.3
Nitab4.5_0010601g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 3.9e-42 175.3 144 63.2
Os02g0121000 Oryza sativa ssp. japonica HOM05D005082 ORTHO05D006474 3.9e-42 175.3 145 60.7
Aa31LG1G17860 Aethionema arabicum HOM05D005082 ORTHO05D006474 5.1e-42 174.9 144 59.0
Ah.01g017700 Amaranthus hybridus HOM05D005082 ORTHO05D006474 5.1e-42 174.9 145 60.7
Phvul.010G038400 Phaseolus vulgaris HOM05D005082 ORTHO05D006474 6.7e-42 174.5 144 61.8
AUR62013197 Chenopodium quinoa HOM05D005082 ORTHO05D006474 8.8e-42 174.1 145 60.7
Sabra04G0140300 Salix brachista HOM05D005082 ORTHO05D006474 8.8e-42 174.1 145 57.9
AUR62010207 Chenopodium quinoa HOM05D005082 ORTHO05D006474 1.1e-41 173.7 145 60.7
COL.COLO4_03850 Corchorus olitorius HOM05D005082 ORTHO05D006474 1.1e-41 173.7 138 63.0
BcaB02g09792 Brassica carinata HOM05D005082 ORTHO05D006474 1.5e-41 173.3 148 60.1
Glyma.07G124000 Glycine max HOM05D005082 ORTHO05D006474 1.5e-41 173.3 152 58.6
Potri.009G169700 Populus trichocarpa HOM05D005082 ORTHO05D006474 1.5e-41 173.3 145 59.3
RcHm_v2.0_Chr6g0277491 Rosa chinensis HOM05D005082 ORTHO05D006474 1.5e-41 173.3 148 58.8
VMungo0331G1808 Vigna mungo HOM05D005082 ORTHO05D006474 1.5e-41 173.3 144 61.1
Ca_25889_v3 Cicer arietinum L. HOM05D005082 ORTHO05D006474 2.0e-41 172.9 145 60.0
Zm00001eb230310 Zea mays HOM05D005082 ORTHO05D006474 2.0e-41 172.9 145 60.7
Hund06352 Selenicereus undatus HOM05D005082 ORTHO05D006474 2.5e-41 172.6 145 60.7
Cc09_g10910 Coffea canephora HOM05D005082 ORTHO05D006474 3.3e-41 172.2 147 60.5
Peaxi162Scf00362g00137 Petunia axillaris HOM05D005082 ORTHO05D006474 4.3e-41 171.8 144 61.8
Sed0020521 Sechium edule HOM05D005082 ORTHO05D006474 5.7e-41 171.4 145 58.6
Medtr8g009900 Medicago truncatula HOM05D005082 ORTHO05D006474 2.2e-40 169.5 145 58.6
arahy.Tifrunner.gnm1.ann1.44ERQ5 Arachis hypogaea HOM05D005082 ORTHO05D006474 2.8e-40 169.1 144 58.3
arahy.Tifrunner.gnm1.ann1.M18VWQ Arachis hypogaea HOM05D005082 ORTHO05D006474 3.7e-40 168.7 144 58.3
CDE06G2564 Ceratophyllum demersum HOM05D005082 ORTHO05D006474 3.7e-40 168.7 145 55.2
Lj3g0023171 Lotus japonicus HOM05D005082 ORTHO05D006474 3.7e-40 168.7 144 59.0
SalBow1G4726 Salvia bowleyana HOM05D005082 ORTHO05D006474 4.8e-40 168.3 148 60.8
HanXRQChr14g0455171 Helianthus annuus HOM05D005082 ORTHO05D006474 6.3e-40 167.9 145 59.3
Solyc01g112290.4 Solanum lycopersicum HOM05D005082 ORTHO05D006474 8.2e-40 167.5 144 60.4
Sopen01g054400 Solanum pennellii HOM05D005082 ORTHO05D006474 8.2e-40 167.5 144 60.4
EL10Ac9g21557 Beta vulgaris HOM05D005082 ORTHO05D006474 1.1e-39 167.2 148 57.4
CAN.G1645.8 Capsicum annuum HOM05D005082 ORTHO05D006474 1.4e-39 166.8 144 59.7
Lsat_1_v5_gn_8_119500 Lactuca sativa HOM05D005082 ORTHO05D006474 2.6e-38 162.5 145 58.6
Lalb_Chr12g0210191 Lupinus albus HOM05D005082 ORTHO05D006474 3.4e-38 162.2 144 57.6
Actinidia20586 Actinidia chinensis HOM05D005082 ORTHO05D006474 5.9e-38 161.4 144 59.0
ECA233G3220 Erigeron canadensis HOM05D005082 ORTHO05D006474 7.7e-38 161.0 145 58.6
FAN20G1299 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.0e-37 160.6 148 56.1
FAN24G2999 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.3e-37 160.2 148 56.1
Lalb_Chr07g0194811 Lupinus albus HOM05D005082 ORTHO05D006474 1.7e-37 159.8 144 54.9
FAN27G0598 Fragaria x ananassa HOM05D005082 ORTHO05D006474 2.2e-37 159.5 148 55.4
MBI01_g28404_MAGBIO Magnolia biondii HOM05D005082 ORTHO05D006474 2.9e-37 159.1 175 52.0
FAN15G2332 Fragaria x ananassa HOM05D005082 ORTHO05D006474 3.8e-37 158.7 148 55.4
TPR.G17355 Trifolium pratense HOM05D005082 ORTHO05D006474 8.5e-37 157.5 181 47.5
vmacro16288 Vaccinium macrocarpon HOM05D005082 ORTHO05D006474 6.1e-35 151.4 199 43.7
DCAR_001519 Daucus carota HOM05D005082 ORTHO05D006474 3.9e-34 148.7 145 52.4
DCAR_006224 Daucus carota HOM05D005082 ORTHO05D006474 1.3e-32 143.7 145 51.7
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 3.7e-32 142.1 119 62.2
Psat4g215760 Pisum sativum HOM05D005082 ORTHO05D006474 2.4e-31 139.4 119 61.3
SEGI_01300 Sequoiadendron giganteum HOM05D005082 ORTHO05D006474 2.4e-31 139.4 149 48.3
Nitab4.5_0005317g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 9.4e-28 127.5 114 64.0
PGR142G3202 Punica granatum HOM05D005082 ORTHO05D006474 9.4e-28 127.5 104 60.6
PGR004G1860 Punica granatum HOM05D005082 ORTHO05D006474 2.1e-27 126.3 104 59.6
Mapoly0005s0181 Marchantia polymorpha HOM05D005082 ORTHO05D006474 3.6e-27 125.6 142 45.8
CSS0018221 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 1.8e-26 123.2 98 63.3
Pp3c1_10010 Physcomitrium patens HOM05D005082 ORTHO05D006474 4.0e-26 122.1 143 45.5
AagrBONN_evm.TU.Sc2ySwM_117.3203 Anthoceros agrestis HOM05D005082 ORTHO05D006474 9.7e-25 117.5 144 44.4
Haze_01956 Corylus avellana HOM05D005082 ORTHO05D006474 1.8e-23 113.2 139 47.5
SMO134G0063 Selaginella moellendorffii HOM05D005082 ORTHO05D006474 1.6e-22 110.2 150 44.0
CBR_g25940 Chara braunii HOM05D005082 ORTHO05D006474 3.8e-21 105.5 147 36.7
Sc08g0002050 Simmondsia chinensis HOM05D005082 ORTHO05D006474 3.6e-19 99.0 91 54.9
Cre07.g313700 Chlamydomonas reinhardtii HOM05D005082 ORTHO05D006474 1.5e-17 93.6 140 36.4
PRCOL_00001874 Prasinoderma coloniale HOM05D005082 ORTHO05D006474 2.7e-14 82.8 142 34.5
MCO11G616 Micromonas commoda HOM05D005082 ORTHO05D006474 1.6e-11 73.6 147 35.4
Sed0003916 Sechium edule HOM05D005082 ORTHO05D006474 2.7e-11 72.8 60 65.0
Aa31LG6G3290 Aethionema arabicum HOM05D005082 ORTHO05D006474 2.6e-09 66.2 75 52.0
FAN04G1942 Fragaria x ananassa HOM05D005082 ORTHO05D006474 2.2e-08 63.2 115 32.2
CSS0015047 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 7.7e-06 54.7 34 76.5


User provided reference genes

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