Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39788 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.2e-86 323.2 163 100.0
SEGI_28851 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 2.4e-39 166.0 122 70.5
SEGI_02756 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.0e-37 160.6 122 68.0
SEGI_05943 Sequoiadendron giganteum HOM05D002122 ORTHO05D007864 1.2e-14 84.0 72 55.6
SEGI_34102 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 4.7e-11 72.0 48 79.2
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 3.1e-10 69.3 48 77.1
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 3.1e-10 69.3 48 77.1
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 5.2e-10 68.6 48 72.9
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 6.8e-10 68.2 81 53.1
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 8.9e-10 67.8 57 63.2
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 8.9e-10 67.8 48 75.0
SEGI_04184 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 8.9e-10 67.8 60 63.3
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 8.9e-10 67.8 48 75.0
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 1.2e-09 67.4 48 72.9
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 1.2e-09 67.4 48 72.9
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 1.2e-09 67.4 48 75.0
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 1.5e-09 67.0 48 72.9
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 1.5e-09 67.0 48 72.9
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 1.5e-09 67.0 48 72.9
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 2.0e-09 66.6 48 72.9
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 2.0e-09 66.6 48 72.9
PGSC0003DMG402009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 2.0e-09 66.6 48 72.9
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 2.0e-09 66.6 48 72.9
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 2.6e-09 66.2 51 70.6
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 2.6e-09 66.2 48 72.9
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 2.6e-09 66.2 48 72.9
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 3.4e-09 65.9 48 70.8
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 3.4e-09 65.9 48 70.8
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 3.4e-09 65.9 48 70.8
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 3.4e-09 65.9 81 49.4
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 3.4e-09 65.9 47 70.2
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 3.4e-09 65.9 48 70.8
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 3.4e-09 65.9 48 70.8
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 3.4e-09 65.9 48 70.8
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 3.4e-09 65.9 48 68.8
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 4.4e-09 65.5 48 68.8
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 4.4e-09 65.5 48 70.8
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 4.4e-09 65.5 48 70.8
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 4.4e-09 65.5 48 70.8
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 4.4e-09 65.5 48 70.8
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 4.4e-09 65.5 48 70.8
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 4.4e-09 65.5 48 70.8
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 4.4e-09 65.5 48 72.9
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 5.8e-09 65.1 48 70.8
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 5.8e-09 65.1 48 68.8
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 5.8e-09 65.1 48 70.8
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 5.8e-09 65.1 48 70.8
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 5.8e-09 65.1 48 68.8
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 5.8e-09 65.1 48 70.8
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 5.8e-09 65.1 48 66.7
TPR.G25454 Trifolium pratense HOM05D006401 ORTHO05D007864 5.8e-09 65.1 48 70.8
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 7.5e-09 64.7 81 49.4
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 7.5e-09 64.7 48 66.7
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 7.5e-09 64.7 48 66.7
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 7.5e-09 64.7 48 68.8
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 7.5e-09 64.7 48 68.8
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 7.5e-09 64.7 48 68.8
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 7.5e-09 64.7 48 68.8
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 9.8e-09 64.3 48 70.8
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 9.8e-09 64.3 48 68.8
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 9.8e-09 64.3 48 70.8
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 1.3e-08 63.9 48 68.8
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 1.3e-08 63.9 48 68.8
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.3e-08 63.9 48 68.8
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.3e-08 63.9 48 68.8
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 1.3e-08 63.9 80 50.0
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 1.7e-08 63.5 48 70.8
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 3.7e-08 62.4 48 66.7
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 3.7e-08 62.4 48 70.8
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 4.9e-08 62.0 48 66.7
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 4.9e-08 62.0 48 68.8
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 6.4e-08 61.6 81 46.9
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 6.4e-08 61.6 48 66.7
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 6.4e-08 61.6 48 66.7
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 8.3e-08 61.2 81 49.4
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 8.3e-08 61.2 81 46.9
Lj9A5T15 Lonicera japonica HOM05D006401 ORTHO05D007864 1.1e-07 60.8 81 45.7
Lju50A23T26 Lonicera japonica HOM05D006401 ORTHO05D007864 1.1e-07 60.8 81 45.7
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 1.1e-07 60.8 48 64.6
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 1.4e-07 60.5 80 50.0
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 1.4e-07 60.5 81 46.9
FAN07G0669 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.9e-07 60.1 48 64.6
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 2.4e-07 59.7 48 64.6
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 2.4e-07 59.7 48 64.6
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 2.4e-07 59.7 48 64.6
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 2.4e-07 59.7 48 64.6
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 3.2e-07 59.3 48 64.6
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 3.2e-07 59.3 48 64.6
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 3.2e-07 59.3 48 64.6
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 3.2e-07 59.3 48 64.6
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 3.2e-07 59.3 48 64.6
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 3.2e-07 59.3 48 64.6
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 4.1e-07 58.9 48 64.6


User provided reference genes

Program Settings