Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 5.1e-199 698.0 478 100.0
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 1.9e-31 141.4 422 31.8
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 1.1e-28 132.1 413 30.3
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 2.5e-28 131.0 421 29.5
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 1.8e-26 124.8 409 29.3
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 2.3e-26 124.4 412 29.9
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 2.0e-25 121.3 421 29.0
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 2.0e-25 121.3 429 29.8
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 2.6e-25 120.9 423 28.6
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 2.6e-25 120.9 412 29.9
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 3.4e-25 120.6 422 33.2
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 2.2e-24 117.9 409 30.1
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 2.9e-24 117.5 409 29.1
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 2.9e-24 117.5 410 28.0
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 3.8e-24 117.1 418 29.7
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 4.9e-24 116.7 411 33.1
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 1.1e-23 115.5 422 30.6
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 1.1e-23 115.5 410 30.0
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 2.4e-23 114.4 414 30.4
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 3.2e-23 114.0 412 29.1
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 5.4e-23 113.2 417 29.0
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 5.4e-23 113.2 419 28.4
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 7.1e-23 112.8 408 29.9
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 9.2e-23 112.5 408 29.4
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 1.6e-22 111.7 416 28.4
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 2.1e-22 111.3 406 27.8
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 2.1e-22 111.3 415 29.6
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 2.7e-22 110.9 417 28.3
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 2.7e-22 110.9 409 30.3
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 2.7e-22 110.9 414 29.0
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 3.5e-22 110.5 421 28.0
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 6.0e-22 109.8 410 31.0
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 6.0e-22 109.8 437 27.5
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 1.0e-21 109.0 411 29.9
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 1.0e-21 109.0 408 27.5
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 1.3e-21 108.6 417 30.7
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 1.3e-21 108.6 408 27.5
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 3.9e-21 107.1 411 28.0
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 3.9e-21 107.1 410 28.0
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 3.9e-21 107.1 394 26.9
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 5.1e-21 106.7 418 28.9
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 5.1e-21 106.7 422 27.5
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 6.6e-21 106.3 421 27.8
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 8.6e-21 105.9 414 29.7
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 8.6e-21 105.9 408 28.9
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.1e-20 105.5 432 27.5
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 1.1e-20 105.5 417 26.9
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 1.1e-20 105.5 199 39.7
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.5e-20 104.4 436 28.0
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 7.3e-20 102.8 418 31.6
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 7.3e-20 102.8 421 29.2
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 7.3e-20 102.8 415 31.6
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 1.6e-19 101.7 417 29.3
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 1.6e-19 101.7 415 29.9
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 1.6e-19 101.7 414 27.1
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 2.8e-19 100.9 473 26.2
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 2.8e-19 100.9 413 26.6
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 2.8e-19 100.9 408 25.7
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 3.6e-19 100.5 408 27.7
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 4.7e-19 100.1 408 27.9
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 4.7e-19 100.1 411 27.7
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 6.2e-19 99.8 412 28.6
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 6.2e-19 99.8 412 31.1
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 6.2e-19 99.8 412 31.1
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 6.2e-19 99.8 419 31.3
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 1.1e-18 99.0 412 26.7
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 1.1e-18 99.0 407 28.3
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 1.1e-18 99.0 400 28.8
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 1.4e-18 98.6 408 27.9
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 2.4e-18 97.8 406 27.8
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 2.4e-18 97.8 412 31.3
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 2.4e-18 97.8 412 31.3
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 2.4e-18 97.8 412 31.3
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 4.0e-18 97.1 410 27.1
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 1.2e-17 95.5 413 26.4
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 1.5e-17 95.1 413 25.9
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 2.6e-17 94.4 409 28.1
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 2.6e-17 94.4 404 29.2
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 3.4e-17 94.0 413 30.5
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 7.6e-17 92.8 412 33.5
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 7.6e-17 92.8 430 26.0
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 2.2e-16 91.3 409 27.4
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 2.2e-16 91.3 410 26.3
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 2.9e-16 90.9 422 28.9
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 2.9e-16 90.9 410 26.8
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 4.9e-16 90.1 402 27.4
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 4.9e-16 90.1 418 26.1
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 8.4e-16 89.4 417 28.1
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 1.1e-15 89.0 415 28.0
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 1.4e-15 88.6 411 27.3
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 1.9e-15 88.2 397 27.0
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 3.2e-15 87.4 419 26.5
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 7.1e-15 86.3 66 56.1
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 7.1e-15 86.3 66 57.6
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 1.2e-14 85.5 165 36.4
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.2e-14 85.5 200 36.5
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 1.2e-14 85.5 408 25.2
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 1.6e-14 85.1 66 54.5
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 2.1e-14 84.7 411 26.8
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 2.1e-14 84.7 398 27.1
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 4.6e-14 83.6 66 59.1
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.6e-14 83.6 66 54.5
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 6.0e-14 83.2 411 26.5
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 6.0e-14 83.2 159 40.3
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 7.8e-14 82.8 156 41.0
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 1.3e-13 82.0 406 24.9
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 1.3e-13 82.0 410 25.1
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 1.7e-13 81.6 411 26.8
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 2.3e-13 81.3 411 26.8
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 3.9e-13 80.5 75 53.3
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 5.1e-13 80.1 64 59.4
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 5.1e-13 80.1 63 58.7
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 6.6e-13 79.7 73 53.4
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 6.6e-13 79.7 73 53.4
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 8.7e-13 79.3 403 26.3
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 8.7e-13 79.3 69 59.4
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.5e-12 78.6 66 53.0
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 1.9e-12 78.2 411 25.5
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.9e-12 78.2 50 58.0
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 3.3e-12 77.4 70 54.3
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 7.3e-12 76.3 49 65.3
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 7.3e-12 76.3 63 57.1
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 7.3e-12 76.3 63 57.1
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 1.3e-11 75.5 413 26.2
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 2.8e-11 74.3 67 47.8
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 2.8e-11 74.3 67 47.8
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 3.6e-11 73.9 63 52.4
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 3.6e-11 73.9 424 24.1
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 4.8e-11 73.6 63 52.4
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 4.8e-11 73.6 63 54.0
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 4.8e-11 73.6 65 47.7
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 8.1e-11 72.8 409 24.0
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 1.1e-10 72.4 401 25.2
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 1.1e-10 72.4 63 47.6
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 1.1e-10 72.4 48 54.2
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.4e-10 72.0 380 26.6
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 1.8e-10 71.6 66 47.0
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 2.4e-10 71.2 386 25.9
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 2.4e-10 71.2 403 27.8
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 2.4e-10 71.2 416 23.3
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 3.1e-10 70.9 410 24.4
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 4.0e-10 70.5 406 24.9
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 4.0e-10 70.5 409 29.1
Psat4g207560 Pisum sativum HOM05D003719 ORTHO05D004116 4.0e-10 70.5 69 46.4
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 5.3e-10 70.1 123 34.1
C03p09860 Brassica napus HOM05D003719 ORTHO05D004116 6.9e-10 69.7 114 37.7
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 6.9e-10 69.7 406 25.1
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 9.0e-10 69.3 389 26.7
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 1.2e-09 68.9 63 54.0
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 1.2e-09 68.9 413 25.2
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 1.5e-09 68.6 66 50.0
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 2.0e-09 68.2 389 27.0
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 2.6e-09 67.8 387 26.9
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 3.4e-09 67.4 410 23.4
CAN.G1612.6 Capsicum annuum HOM05D003719 ORTHO05D004116 4.5e-09 67.0 61 49.2
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 7.6e-09 66.2 410 23.9
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 7.6e-09 66.2 410 23.9
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 7.6e-09 66.2 133 35.3
PSO017G2223 Papaver somniferum HOM05D003719 ORTHO05D004116 9.9e-09 65.9 63 54.0
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 9.9e-09 65.9 157 35.0
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.3e-08 65.5 410 22.2
PSO349G0045 Papaver somniferum HOM05D003719 ORTHO05D004116 1.3e-08 65.5 49 57.1
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 2.9e-08 64.3 409 24.9
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 2.9e-08 64.3 409 24.9
PSO732G0498 Papaver somniferum HOM05D003719 ORTHO05D004116 3.8e-08 63.9 66 51.5
PSO732G0548 Papaver somniferum HOM05D003719 ORTHO05D004116 3.8e-08 63.9 66 51.5
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 4.9e-08 63.5 401 20.9
AagrBONN_evm.TU.Sc2ySwM_228.2121 Anthoceros agrestis HOM05D035521 ORTHO05D031165 1.1e-07 62.4 249 32.5
PSO732G0588 Papaver somniferum HOM05D003719 ORTHO05D004116 3.2e-07 60.8 49 53.1
FAN01G0740 Fragaria x ananassa HOM05D003719 ORTHO05D004116 5.4e-07 60.1 49 57.1
CAN.G1260.1 Capsicum annuum HOM05D003719 ORTHO05D004116 7.1e-07 59.7 57 49.1
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 4.6e-06 57.0 392 24.0
arahy.Tifrunner.gnm1.ann1.RGD672 Arachis hypogaea HOM05D022377 ORTHO05D004116 7.9e-06 56.2 68 38.2


User provided reference genes

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