Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37547 Sequoiadendron giganteum HOM05D002718 ORTHO05D006759 2.3e-134 482.3 249 100.0
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.8e-31 139.8 103 65.0
PSO675G7617 Papaver somniferum HOM05D002718 ORTHO05D003269 3.6e-10 69.7 40 90.0
Potri.018G145700 Populus trichocarpa HOM05D002718 ORTHO05D003269 3.6e-10 69.7 40 87.5
Dinv38809 Davidia involucrata HOM05D002718 ORTHO05D003269 1.0e-09 68.2 40 87.5
MSTRG.10465 Avicennia marina HOM05D002718 ORTHO05D003269 1.4e-09 67.8 40 82.5
Nn5g27632 Nelumbo nucifera HOM05D002718 ORTHO05D003269 1.4e-09 67.8 40 87.5
Nn8g41097 Nelumbo nucifera HOM05D002718 ORTHO05D003269 1.4e-09 67.8 40 87.5
TAR383G0086 Trochodendron aralioides HOM05D002718 ORTHO05D003269 1.4e-09 67.8 40 87.5
CSS0012006 Camellia sinensis var. sinensis HOM05D002718 ORTHO05D003269 2.3e-09 67.0 40 85.0
ATR0626G149 Amborella trichopoda HOM05D002718 ORTHO05D003269 3.0e-09 66.6 40 85.0
EL10Ac2g03697 Beta vulgaris HOM05D002718 ORTHO05D003269 3.0e-09 66.6 40 82.5
AUR62020642 Chenopodium quinoa HOM05D002718 ORTHO05D003269 3.0e-09 66.6 40 82.5
AUR62038736 Chenopodium quinoa HOM05D002718 ORTHO05D003269 3.0e-09 66.6 40 82.5
SEGI_10582 Sequoiadendron giganteum HOM05D000006 ORTHO05D000001 3.0e-09 66.6 55 56.4
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 82.5
MSTRG.11818 Avicennia marina HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 85.0
MSTRG.25768 Avicennia marina HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 85.0
BcaB08g35974 Brassica carinata HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 82.5
DCAR_004565 Daucus carota HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 82.5
Eucgr.C02132 Eucalyptus grandis HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 85.0
FvH4_2g36460 Fragaria vesca HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 82.5
FAN15G0923 Fragaria x ananassa HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 82.5
FAN27G0986 Fragaria x ananassa HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 82.5
Glyma.14G138300 Glycine max HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 80.0
Hma1.2p1_0284F.1_g113850 Hydrangea macrophylla HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 85.0
MD08G1124400 Malus domestica HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 85.0
MD15G1103100 Malus domestica HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 85.0
PGR142G2777 Punica granatum HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 82.5
RcHm_v2.0_Chr6g0305421 Rosa chinensis HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 85.0
SEGI_24117 Sequoiadendron giganteum HOM05D002718 ORTHO05D003269 4.0e-09 66.2 40 87.5
BcaC04g20159 Brassica carinata HOM05D002718 ORTHO05D003269 5.2e-09 65.9 40 82.5
BraA10t43426Z Brassica rapa HOM05D002718 ORTHO05D003269 5.2e-09 65.9 40 82.5
Carub.0007s2548 Capsella rubella HOM05D002718 ORTHO05D003269 5.2e-09 65.9 52 71.2
Thhalv10012582m.g Eutrema salsugineum HOM05D002718 ORTHO05D003269 5.2e-09 65.9 40 82.5
Sp6g17930 Schrenkiella parvula HOM05D002718 ORTHO05D003269 5.2e-09 65.9 40 82.5
HPP92_017382 Vanilla planifolia HOM05D002718 ORTHO05D003269 5.2e-09 65.9 40 85.0
AL7G39040 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 6.7e-09 65.5 40 82.5
AT3G42850 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 6.7e-09 65.5 40 80.0
Carub.0005s0889 Capsella rubella HOM05D002718 ORTHO05D003269 6.7e-09 65.5 40 80.0
Cpa.g.sc115.31 Carica papaya HOM05D002718 ORTHO05D003269 6.7e-09 65.5 40 80.0
Dinv37495 Davidia involucrata HOM05D002718 ORTHO05D003269 6.7e-09 65.5 40 82.5
Migut.A00453 Erythranthe guttata HOM05D002718 ORTHO05D003269 6.7e-09 65.5 71 59.2
FAN20G1933 Fragaria x ananassa HOM05D002718 ORTHO05D003269 6.7e-09 65.5 40 82.5
Sabra18G0127600 Salix brachista HOM05D002718 ORTHO05D003269 6.7e-09 65.5 64 62.5
THA.LOC104802597 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 6.7e-09 65.5 40 85.0
vmacro08496 Vaccinium macrocarpon HOM05D002718 ORTHO05D003269 6.7e-09 65.5 40 82.5
Aqoxy4G00376 Aquilegia oxysepala HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 82.5
AT4G16130 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 82.5
Cpa.g.sc148.1 Carica papaya HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 80.0
Cc11_g03230 Coffea canephora HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 80.0
Thhalv10024313m.g Eutrema salsugineum HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 82.5
Lj5g0024079 Lotus japonicus HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 82.5
Os02g0141300 Oryza sativa ssp. japonica HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 80.0
Prupe.1G456000 Prunus persica HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 82.5
SGA_v2.0_scaffold27G11655 Striga asiatica HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 82.5
unitig_748.g8176 Utricularia gibba HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 80.0
GSVIVG01035565001 Vitis vinifera HOM05D002718 ORTHO05D003269 8.8e-09 65.1 40 82.5
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 80.0
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 80.0
BolC9t57573H Brassica oleracea HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 80.0
CARHR222420 Cardamine hirsuta HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 80.0
CiPaw.08G021400 Carya illinoinensis HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 82.5
CBR_g29486 Chara braunii HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 80.0
ClCG10G008570 Citrullus lanatus HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 82.5
Ciclev10007339m.g Citrus clementina HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 82.5
COL.COLO4_18626 Corchorus olitorius HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 82.5
MELO3C018969.2 Cucumis melo HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 82.5
CsaV3_4G009070 Cucumis sativus L. HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 82.5
Phvul.001G077700 Phaseolus vulgaris HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 80.0
Sp7g14590 Schrenkiella parvula HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 82.5
Sed0009215 Sechium edule HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 82.5
Hund03264 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-08 64.7 40 80.0
Thecc.09G002800 Theobroma cacao HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 82.5
TWI32G0829 Tripterygium wilfordii HOM05D002718 ORTHO05D003269 1.2e-08 64.7 40 85.0
Actinidia25741 Actinidia chinensis HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
arahy.Tifrunner.gnm1.ann1.NA6C8E Arachis hypogaea HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
arahy.Tifrunner.gnm1.ann1.YWBJ1A Arachis hypogaea HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
BcaC09g50300 Brassica carinata HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
BcaNung00226 Brassica carinata HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
A01p21500 Brassica napus HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
C01p26840 Brassica napus HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
BolC1t02628H Brassica oleracea HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
BraA01t02056Z Brassica rapa HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
CANSAT25G2302 Cannabis sativa HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
CANSAT35G0611 Cannabis sativa HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 82.5
Gohir.A06G107500 Gossypium hirsutum HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 82.5
Gohir.D06G109800 Gossypium hirsutum HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 82.5
Gorai.010G124600 Gossypium raimondii HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 82.5
Lalb_Chr22g0361171 Lupinus albus HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 82.5
Os06g0702500 Oryza sativa ssp. japonica HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 82.5
PSO170G4524 Papaver somniferum HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 80.0
SalBow4G0158 Salvia bowleyana HOM05D002718 ORTHO05D003269 1.5e-08 64.3 40 82.5
Atru.chr7.2686 Acer truncatum HOM05D002718 ORTHO05D003269 2.0e-08 63.9 40 80.0
Aa31LG10G6050 Aethionema arabicum HOM05D002718 ORTHO05D003269 2.0e-08 63.9 40 82.5
DCAR_000671 Daucus carota HOM05D002718 ORTHO05D003269 2.0e-08 63.9 40 77.5
Manes.16G137600 Manihot esculenta HOM05D002718 ORTHO05D003269 2.0e-08 63.9 40 77.5
Potri.018G003100 Populus trichocarpa HOM05D002718 ORTHO05D003269 2.0e-08 63.9 40 80.0
Sabra18G0002900 Salix brachista HOM05D002718 ORTHO05D003269 2.0e-08 63.9 40 80.0
Sabra18G0006600 Salix brachista HOM05D002718 ORTHO05D003269 2.0e-08 63.9 40 80.0
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 2.0e-08 63.9 40 80.0
Sabra18G0009800 Salix brachista HOM05D002718 ORTHO05D003269 2.0e-08 63.9 40 80.0
AL5G21150 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 2.6e-08 63.5 40 80.0
Duzib168G0110 Durio zibethinus HOM05D002718 ORTHO05D003269 2.6e-08 63.5 40 80.0
Glyma.17G194400 Glycine max HOM05D002718 ORTHO05D003269 2.6e-08 63.5 40 77.5
HanXRQChr17g0539291 Helianthus annuus HOM05D002718 ORTHO05D003269 2.6e-08 63.5 40 80.0
Nitab4.5_0000970g0160 Nicotiana tabacum HOM05D002718 ORTHO05D003269 2.6e-08 63.5 40 80.0
Nitab4.5_0001942g0140 Nicotiana tabacum HOM05D002718 ORTHO05D003269 2.6e-08 63.5 40 80.0
Sabra18G0120000 Salix brachista HOM05D002718 ORTHO05D003269 2.6e-08 63.5 38 84.2
SEGI_34808 Sequoiadendron giganteum HOM05D002718 ORTHO05D003269 2.6e-08 63.5 38 84.2
Sc06g0001240 Simmondsia chinensis HOM05D002718 ORTHO05D003269 2.6e-08 63.5 40 80.0
Zm00001eb227090 Zea mays HOM05D002718 ORTHO05D003269 2.6e-08 63.5 40 82.5
CARHR153820 Cardamine hirsuta HOM05D002718 ORTHO05D003269 3.3e-08 63.2 40 75.0
Psat6g034400 Pisum sativum HOM05D002718 ORTHO05D003269 3.3e-08 63.2 51 66.7
SHI02366 Sapria himalayana HOM05D002718 ORTHO05D003269 3.3e-08 63.2 40 80.0
Cfa013311 Carpinus fangiana HOM05D002718 ORTHO05D003269 4.4e-08 62.8 40 82.5
MBI16_g37213_MAGBIO Magnolia biondii HOM05D002718 ORTHO05D003269 4.4e-08 62.8 47 72.3
Psat0s2005g0040 Pisum sativum HOM05D002718 ORTHO05D003269 4.4e-08 62.8 158 36.1
PGR084G0004 Punica granatum HOM05D002718 ORTHO05D003269 4.4e-08 62.8 40 80.0
PGR142G1783 Punica granatum HOM05D002718 ORTHO05D003269 4.4e-08 62.8 40 80.0
Solyc07g016170.4 Solanum lycopersicum HOM05D002718 ORTHO05D003269 4.4e-08 62.8 40 77.5
Sopen00g003670 Solanum pennellii HOM05D002718 ORTHO05D003269 4.4e-08 62.8 40 77.5
Sopen07g005900 Solanum pennellii HOM05D002718 ORTHO05D003269 4.4e-08 62.8 40 77.5
THA.LOC104820278 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 4.4e-08 62.8 40 80.0
VMungo0647G1266 Vigna mungo HOM05D002718 ORTHO05D003269 4.4e-08 62.8 40 77.5
Zm00001eb208110 Zea mays HOM05D002718 ORTHO05D003269 4.4e-08 62.8 40 80.0
Manes.03G001300 Manihot esculenta HOM05D002718 ORTHO05D003269 5.7e-08 62.4 70 54.3
Peaxi162Scf00213g00943 Petunia axillaris HOM05D002718 ORTHO05D003269 5.7e-08 62.4 40 77.5
Solyc08g069231.1 Solanum lycopersicum HOM05D002718 ORTHO05D003269 5.7e-08 62.4 40 77.5
Sopen08g022860 Solanum pennellii HOM05D002718 ORTHO05D003269 5.7e-08 62.4 40 77.5
CiPaw.07G209700 Carya illinoinensis HOM05D002718 ORTHO05D003269 7.5e-08 62.0 40 80.0
Ca_12844_v3 Cicer arietinum L. HOM05D002718 ORTHO05D003269 7.5e-08 62.0 40 80.0
Cc00_g00350 Coffea canephora HOM05D002718 ORTHO05D003269 7.5e-08 62.0 38 81.6
Oeu059291.2 Olea europaea HOM05D002718 ORTHO05D003269 7.5e-08 62.0 39 82.1
THA.LOC104810997 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 7.5e-08 62.0 40 77.5
GSVIVG01032250001 Vitis vinifera HOM05D002718 ORTHO05D003269 7.5e-08 62.0 38 81.6
CAN.G480.17 Capsicum annuum HOM05D002718 ORTHO05D003269 9.7e-08 61.6 40 75.0
Pp3c16_4920 Physcomitrium patens HOM05D002718 ORTHO05D003269 9.7e-08 61.6 40 77.5
TPR.G12004 Trifolium pratense HOM05D002718 ORTHO05D003269 9.7e-08 61.6 40 80.0
Lsat_1_v5_gn_3_26460 Lactuca sativa HOM05D002718 ORTHO05D003269 1.3e-07 61.2 40 77.5
Lalb_Chr08g0243461 Lupinus albus HOM05D002718 ORTHO05D003269 1.3e-07 61.2 40 80.0
QL12p025880 Quercus lobata HOM05D002718 ORTHO05D003269 1.3e-07 61.2 40 80.0
SMO146G0086 Selaginella moellendorffii HOM05D002718 ORTHO05D003269 1.3e-07 61.2 40 77.5
Haze_21795 Corylus avellana HOM05D002718 ORTHO05D003269 1.7e-07 60.8 40 80.0
Sabra18G0006300 Salix brachista HOM05D002718 ORTHO05D003269 1.7e-07 60.8 38 78.9
AagrBONN_evm.TU.Sc2ySwM_117.407 Anthoceros agrestis HOM05D002718 ORTHO05D003269 2.2e-07 60.5 40 77.5
Medtr1g009190 Medicago truncatula HOM05D002718 ORTHO05D003269 2.2e-07 60.5 40 77.5
MELO3C003601.2 Cucumis melo HOM05D002718 ORTHO05D003269 3.7e-07 59.7 40 75.0
CsaV3_3G047280 Cucumis sativus L. HOM05D002718 ORTHO05D003269 3.7e-07 59.7 40 75.0
ECA246G1707 Erigeron canadensis HOM05D002718 ORTHO05D003269 3.7e-07 59.7 40 77.5
Nitab4.5_0000899g0120 Nicotiana tabacum HOM05D002718 ORTHO05D003269 3.7e-07 59.7 38 76.3
ClCG05G026320 Citrullus lanatus HOM05D002718 ORTHO05D003269 4.8e-07 59.3 40 75.0
Pp3c6_8620 Physcomitrium patens HOM05D002718 ORTHO05D003269 1.8e-06 57.4 40 75.0
Lj3C988G10 Lonicera japonica HOM05D002718 ORTHO05D003269 2.4e-06 57.0 40 72.5
QL12p025860 Quercus lobata HOM05D002718 ORTHO05D003269 2.4e-06 57.0 40 75.0
Mapoly0043s0024 Marchantia polymorpha HOM05D002718 ORTHO05D003269 3.1e-06 56.6 40 72.5
PRCOL_00002758 Prasinoderma coloniale HOM05D002718 ORTHO05D003269 9.1e-06 55.1 40 67.5


User provided reference genes

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