Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.9e-74 282.3 138 100.0
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 8.3e-25 117.5 177 43.5
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.2e-23 113.6 222 38.3
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 5.0e-22 108.2 224 36.2
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 1.5e-21 106.7 222 36.5
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 3.3e-21 105.5 222 35.6
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 4.3e-21 105.1 222 36.5
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 5.6e-21 104.8 222 35.6
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 5.6e-21 104.8 95 61.1
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 5.6e-21 104.8 222 35.6
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 9.5e-21 104.0 222 35.1
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 1.2e-20 103.6 222 35.1
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 1.2e-20 103.6 222 35.1
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 1.6e-20 103.2 222 35.1
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 1.6e-20 103.2 222 35.1
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 2.1e-20 102.8 222 34.7
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 2.1e-20 102.8 222 34.7
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 3.6e-20 102.1 222 34.2
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 3.6e-20 102.1 222 34.7
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 3.6e-20 102.1 222 34.7
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 34.2
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 34.7
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 34.7
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 33.8
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 34.7
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 34.7
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 34.2
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 34.2
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 35.1
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 4.7e-20 101.7 222 34.7
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 6.1e-20 101.3 228 33.8
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 6.1e-20 101.3 222 34.2
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 6.1e-20 101.3 222 34.7
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 6.1e-20 101.3 222 34.7
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 8.0e-20 100.9 222 34.7
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 8.0e-20 100.9 222 33.8
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 8.0e-20 100.9 222 34.7
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 8.0e-20 100.9 222 33.8
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 8.0e-20 100.9 222 34.7
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 8.0e-20 100.9 222 34.2
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 1.0e-19 100.5 221 34.8
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 1.0e-19 100.5 222 34.2
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 1.0e-19 100.5 222 34.2
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 1.0e-19 100.5 222 34.7
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 1.0e-19 100.5 222 34.7
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 1.0e-19 100.5 222 33.3
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 1.0e-19 100.5 222 33.8
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 1.4e-19 100.1 222 34.2
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 1.4e-19 100.1 222 33.8
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 1.4e-19 100.1 222 34.2
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 1.4e-19 100.1 223 35.0
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 1.4e-19 100.1 222 33.8
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 1.4e-19 100.1 222 34.7
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.4e-19 100.1 216 34.7
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 1.8e-19 99.8 222 34.7
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 1.8e-19 99.8 222 34.2
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 1.8e-19 99.8 222 34.2
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 2.3e-19 99.4 222 33.8
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 2.3e-19 99.4 222 34.2
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 2.3e-19 99.4 222 34.2
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 2.3e-19 99.4 222 34.2
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 2.3e-19 99.4 222 33.8
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 2.3e-19 99.4 222 34.2
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 2.3e-19 99.4 222 33.3
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 3.1e-19 99.0 222 33.3
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 3.1e-19 99.0 222 34.2
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 3.1e-19 99.0 222 34.2
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 3.1e-19 99.0 222 34.2
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 3.1e-19 99.0 222 34.2
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 3.1e-19 99.0 222 34.2
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 3.1e-19 99.0 222 33.3
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 3.1e-19 99.0 223 33.2
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 4.0e-19 98.6 222 33.3
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 4.0e-19 98.6 222 33.3
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 4.0e-19 98.6 222 34.2
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 4.0e-19 98.6 222 34.2
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 4.0e-19 98.6 222 33.8
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 4.0e-19 98.6 222 33.8
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 4.0e-19 98.6 222 33.8
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 4.0e-19 98.6 222 34.2
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 5.2e-19 98.2 222 33.3
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 5.2e-19 98.2 222 33.3
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 8.9e-19 97.4 228 32.9
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 8.9e-19 97.4 222 33.3
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 8.9e-19 97.4 222 33.8
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 1.2e-18 97.1 222 33.3
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 1.2e-18 97.1 222 33.3
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 1.2e-18 97.1 222 32.4
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 1.2e-18 97.1 222 32.4
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 1.2e-18 97.1 222 33.3
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 1.5e-18 96.7 222 33.8
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 1.5e-18 96.7 222 32.9
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 1.5e-18 96.7 222 32.9
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 1.5e-18 96.7 222 33.8
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 1.5e-18 96.7 222 33.8
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 1.5e-18 96.7 222 32.9
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 2.0e-18 96.3 222 33.3
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 2.0e-18 96.3 222 32.9
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 2.0e-18 96.3 222 33.8
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 2.0e-18 96.3 222 33.8
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 2.6e-18 95.9 222 34.2
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 3.4e-18 95.5 245 32.2
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 3.4e-18 95.5 222 33.3
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 4.4e-18 95.1 222 33.8
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 4.4e-18 95.1 222 33.3
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 5.8e-18 94.7 222 33.8
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 5.8e-18 94.7 222 33.3
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 5.8e-18 94.7 222 33.3
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 7.5e-18 94.4 222 33.3
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 7.5e-18 94.4 222 32.9
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 9.8e-18 94.0 222 32.4
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 9.8e-18 94.0 222 32.9
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 9.8e-18 94.0 222 32.9
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 1.3e-17 93.6 222 32.9
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 1.3e-17 93.6 222 32.4
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 1.3e-17 93.6 222 32.9
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 1.3e-17 93.6 222 33.3
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 1.7e-17 93.2 222 33.3
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 1.7e-17 93.2 222 33.3
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 3.7e-17 92.0 222 31.5
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 3.7e-17 92.0 222 32.4
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.4e-16 90.1 222 32.4
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 4.1e-16 88.6 222 32.4
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 5.4e-16 88.2 222 31.5
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 9.2e-16 87.4 238 31.1
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 9.2e-16 87.4 222 31.5
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 9.2e-16 87.4 223 31.4
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 4.6e-15 85.1 222 30.6
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 6.0e-15 84.7 222 30.6
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 1.3e-14 83.6 214 32.2
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 6.6e-14 81.3 255 29.0
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 7.3e-13 77.8 168 38.7
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.7e-12 75.1 151 35.8
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.7e-12 75.1 151 35.8
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 8.1e-12 74.3 151 35.1
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 8.9e-11 70.9 167 36.5
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 2.6e-10 69.3 36 86.1
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 2.6e-10 69.3 36 86.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 5.8e-10 68.2 52 69.2
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 3.2e-08 62.4 60 58.3
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 3.9e-06 55.5 31 87.1


User provided reference genes

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