Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.0e-217 758.8 382 100.0
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 4.4e-193 677.9 345 99.7
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 6.5e-27 125.9 260 34.6
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 7.4e-23 112.5 204 37.3
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 8.2e-22 109.0 215 36.3
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.4e-21 108.2 200 38.5
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 4.1e-21 106.7 201 37.8
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 3.4e-20 103.6 222 35.1
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.5e-20 103.2 192 38.0
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 7.6e-20 102.4 196 37.8
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.0e-19 102.1 192 37.0
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.7e-19 101.3 196 35.7
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.9e-19 100.5 196 35.7
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.9e-19 100.5 191 39.8
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 5.0e-19 99.8 205 32.2
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 6.5e-19 99.4 190 36.8
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 8.4e-19 99.0 201 33.8
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.9e-18 97.8 143 42.7
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.9e-18 97.8 198 37.9
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 2.5e-18 97.4 200 37.0
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 5.5e-18 96.3 143 43.4
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 5.5e-18 96.3 215 31.6
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 7.2e-18 95.9 199 36.7
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 9.3e-18 95.5 202 33.7
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 9.3e-18 95.5 202 31.2
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 9.3e-18 95.5 191 37.7
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.6e-17 94.7 200 33.5
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.6e-17 94.7 202 32.7
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 2.1e-17 94.4 200 36.0
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 2.1e-17 94.4 204 35.3
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 3.5e-17 93.6 199 32.7
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 3.5e-17 93.6 194 36.6
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.6e-17 93.2 192 34.4
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 6.1e-17 92.8 193 32.6
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.9e-17 92.4 203 35.0
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.0e-16 92.0 213 32.9
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 1.3e-16 91.7 132 43.9
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.8e-16 91.3 155 38.7
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.8e-16 91.3 201 32.3
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.3e-16 90.9 143 40.6
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 3.0e-16 90.5 195 34.9
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 3.0e-16 90.5 207 32.9
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.9e-16 90.1 220 33.2
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 3.9e-16 90.1 222 31.1
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.1e-16 89.7 203 33.5
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.1e-16 89.7 200 34.0
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 5.1e-16 89.7 194 34.5
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 6.7e-16 89.4 140 44.3
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 8.7e-16 89.0 192 33.9
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.1e-15 88.6 210 34.8
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.1e-15 88.6 189 35.4
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.1e-15 88.6 138 41.3
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.9e-15 87.8 200 33.5
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.9e-15 87.8 202 33.2
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.9e-15 87.8 193 34.7
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.9e-15 87.8 193 34.7
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 2.5e-15 87.4 208 32.7
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 2.5e-15 87.4 195 35.9
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 2.5e-15 87.4 141 40.4
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 3.3e-15 87.0 204 32.4
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 3.3e-15 87.0 201 33.3
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 5.7e-15 86.3 251 30.7
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 5.7e-15 86.3 199 29.6
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 7.4e-15 85.9 199 31.2
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.7e-15 85.5 208 32.2
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 1.3e-14 85.1 194 35.1
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.3e-14 85.1 211 31.8
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.6e-14 84.7 226 31.9
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 2.2e-14 84.3 195 33.3
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.2e-14 84.3 239 31.8
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 2.8e-14 84.0 195 32.8
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 3.7e-14 83.6 149 39.6
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.8e-14 83.2 205 30.7
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 6.3e-14 82.8 200 33.0
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 8.2e-14 82.4 200 28.5
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 8.2e-14 82.4 192 33.3
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 8.2e-14 82.4 192 33.3
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 8.2e-14 82.4 200 32.5
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 1.1e-13 82.0 195 30.8
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.1e-13 82.0 192 31.8
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-13 81.6 192 30.7
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.8e-13 81.3 188 31.9
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.8e-13 81.3 188 31.9
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.8e-13 81.3 212 29.2
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 3.1e-13 80.5 211 28.4
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 4.1e-13 80.1 143 39.2
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 5.3e-13 79.7 196 31.1
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 6.9e-13 79.3 200 32.0
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 9.0e-13 79.0 139 38.1
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.2e-12 78.6 138 38.4
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.2e-12 78.6 138 38.4
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.2e-12 78.6 138 38.4
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.2e-12 78.6 139 38.1
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.5e-12 78.2 212 28.3
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.5e-12 78.2 201 31.3
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.5e-12 78.2 143 37.1
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 2.6e-12 77.4 141 34.8
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 3.4e-12 77.0 205 28.8
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 3.4e-12 77.0 205 28.8
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 4.5e-12 76.6 203 32.5
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 4.5e-12 76.6 212 27.8
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 4.5e-12 76.6 194 29.9
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 4.5e-12 76.6 222 29.3
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 1.0e-11 75.5 147 36.1
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.3e-11 75.1 207 29.0
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 5.0e-11 73.2 144 34.7
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 8.5e-11 72.4 100 42.0
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 8.5e-11 72.4 138 37.7
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.4e-10 71.6 142 35.2
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.4e-10 71.6 135 34.8
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 1.9e-10 71.2 212 27.4
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.2e-09 68.6 137 36.5
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 6.1e-09 66.2 195 27.2
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 5.1e-08 63.2 85 43.5
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 8.2e-06 55.8 149 30.2


User provided reference genes

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