Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_35973 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 4.0e-69 264.6 133 100.0
SEGI_12185 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 5.0e-19 98.2 64 78.1
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 7.8e-12 74.3 67 59.7
SEGI_21620 Sequoiadendron giganteum HOM05D002696 ORTHO05D009428 1.0e-11 73.9 67 59.7
SEGI_38832 Sequoiadendron giganteum HOM05D000079 ORTHO05D000508 2.9e-11 72.4 72 56.9
SEGI_08001 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 3.3e-10 68.9 67 55.2
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 7.3e-10 67.8 67 52.2
SEGI_22583 Sequoiadendron giganteum HOM05D002613 ORTHO05D003140 2.8e-09 65.9 41 80.5
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 8.0e-09 64.3 68 50.0
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 8.0e-09 64.3 68 50.0
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 8.0e-09 64.3 68 50.0
Dinv06563 Davidia involucrata HOM05D002696 ORTHO05D003940 8.0e-09 64.3 76 47.4
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 8.0e-09 64.3 68 47.1
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 1.0e-08 63.9 68 48.5
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 1.0e-08 63.9 76 47.4
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 1.4e-08 63.5 76 48.7
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.4e-08 63.5 68 47.1
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 1.8e-08 63.2 76 48.7
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 1.8e-08 63.2 78 46.2
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 2.3e-08 62.8 71 46.5
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 2.3e-08 62.8 67 47.8
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 2.3e-08 62.8 65 49.2
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 3.1e-08 62.4 67 47.8
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 3.1e-08 62.4 67 50.7
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 3.1e-08 62.4 68 47.1
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 3.1e-08 62.4 68 47.1
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 3.1e-08 62.4 71 46.5
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 3.1e-08 62.4 71 46.5
QL09p005491 Quercus lobata HOM05D002696 ORTHO05D003940 3.1e-08 62.4 67 49.3
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 3.1e-08 62.4 67 49.3
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 4.0e-08 62.0 67 47.8
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 4.0e-08 62.0 76 46.1
SHI28001 Sapria himalayana HOM05D002696 ORTHO05D000023 4.0e-08 62.0 64 53.1
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 4.0e-08 62.0 67 49.3
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 4.0e-08 62.0 68 45.6
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 4.0e-08 62.0 67 50.7
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 5.2e-08 61.6 67 49.3
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 5.2e-08 61.6 67 49.3
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 5.2e-08 61.6 67 46.3
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 5.2e-08 61.6 67 44.8
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 5.2e-08 61.6 76 46.1
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 5.2e-08 61.6 67 46.3
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 5.2e-08 61.6 67 46.3
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 6.8e-08 61.2 67 46.3
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 6.8e-08 61.2 76 44.7
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 6.8e-08 61.2 67 46.3
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 6.8e-08 61.2 67 46.3
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 8.9e-08 60.8 67 46.3
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 8.9e-08 60.8 67 49.3
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 1.2e-07 60.5 67 46.3
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 1.2e-07 60.5 67 46.3
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 1.2e-07 60.5 65 49.2
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 1.2e-07 60.5 67 47.8
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 1.5e-07 60.1 67 46.3
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 1.5e-07 60.1 65 49.2
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 2.0e-07 59.7 67 46.3
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 2.0e-07 59.7 76 44.7
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 2.0e-07 59.7 67 46.3
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 2.6e-07 59.3 67 44.8
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 2.6e-07 59.3 67 44.8
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 2.6e-07 59.3 67 44.8
Lalb_Chr01g0008031 Lupinus albus HOM05D002696 ORTHO05D003940 2.6e-07 59.3 67 44.8
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 2.6e-07 59.3 67 49.3
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 2.6e-07 59.3 67 44.8
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 3.4e-07 58.9 68 47.1
FvH4_7g27351 Fragaria vesca HOM05D002696 ORTHO05D003940 3.4e-07 58.9 68 45.6
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 3.4e-07 58.9 64 50.0
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 3.4e-07 58.9 67 46.3
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 4.4e-07 58.5 67 47.8
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 4.4e-07 58.5 67 47.8
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 4.4e-07 58.5 67 47.8
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 4.4e-07 58.5 74 47.3
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 4.4e-07 58.5 67 43.3
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 4.4e-07 58.5 67 44.8
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 4.4e-07 58.5 67 43.3
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 4.4e-07 58.5 67 43.3
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 4.4e-07 58.5 67 44.8
MBI08_g12687_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 4.4e-07 58.5 68 45.6
MBI08_g38581_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 4.4e-07 58.5 68 45.6
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 4.4e-07 58.5 68 45.6
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 5.8e-07 58.2 67 44.8
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 5.8e-07 58.2 65 47.7
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 5.8e-07 58.2 67 46.3
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 5.8e-07 58.2 67 46.3
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 5.8e-07 58.2 67 46.3
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 5.8e-07 58.2 65 47.7
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 5.8e-07 58.2 65 46.2
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 7.5e-07 57.8 67 46.3
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 7.5e-07 57.8 67 43.3
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 7.5e-07 57.8 67 46.3
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 7.5e-07 57.8 65 47.7
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 9.8e-07 57.4 67 46.3
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 9.8e-07 57.4 67 46.3
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 9.8e-07 57.4 76 44.7
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 9.8e-07 57.4 76 44.7
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 9.8e-07 57.4 76 44.7
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 9.8e-07 57.4 76 44.7
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 9.8e-07 57.4 76 44.7
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 9.8e-07 57.4 76 44.7
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 9.8e-07 57.4 67 44.8
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 9.8e-07 57.4 67 46.3
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.3e-06 57.0 65 46.2
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 1.3e-06 57.0 67 43.3
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 1.3e-06 57.0 76 44.7
FvH4_7g28371 Fragaria vesca HOM05D002696 ORTHO05D003940 1.3e-06 57.0 76 43.4
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 1.3e-06 57.0 74 43.2
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 1.3e-06 57.0 76 44.7
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 1.7e-06 56.6 65 44.6
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 1.7e-06 56.6 67 44.8
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.7e-06 56.6 76 43.4
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.7e-06 56.6 67 44.8
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 2.2e-06 56.2 67 46.3
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 2.2e-06 56.2 67 46.3
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 2.2e-06 56.2 65 44.6
Solyc03g093250.2 Solanum lycopersicum HOM05D002696 ORTHO05D003940 2.2e-06 56.2 67 44.8
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 2.2e-06 56.2 67 44.8
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 2.2e-06 56.2 65 46.2
HPP92_013637 Vanilla planifolia HOM05D002696 ORTHO05D003940 2.2e-06 56.2 76 43.4
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 2.2e-06 56.2 76 43.4
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 2.9e-06 55.8 67 43.3
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 2.9e-06 55.8 67 43.3
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 2.9e-06 55.8 67 43.3
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.9e-06 55.8 67 47.8
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 3.7e-06 55.5 65 44.6
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 3.7e-06 55.5 67 44.8
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 3.7e-06 55.5 67 44.8
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 3.7e-06 55.5 76 43.4
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 3.7e-06 55.5 67 43.3
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 3.7e-06 55.5 67 41.8
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 4.9e-06 55.1 67 41.8
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 6.4e-06 54.7 67 44.8
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 8.3e-06 54.3 65 44.6
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 8.3e-06 54.3 62 46.8
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 8.3e-06 54.3 65 46.2


User provided reference genes

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