Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34902 Sequoiadendron giganteum HOM05D001707 ORTHO05D001694 1.2e-106 390.2 260 100.0
SEGI_09311 Sequoiadendron giganteum HOM05D001707 ORTHO05D001694 4.8e-66 255.4 218 89.0
CAN.G492.36 Capsicum annuum HOM05D001707 ORTHO05D001694 1.1e-09 68.2 94 45.7
ATR0827G138 Amborella trichopoda HOM05D001707 ORTHO05D001694 1.9e-09 67.4 94 44.7
Lsat_1_v5_gn_5_1401 Lactuca sativa HOM05D001707 ORTHO05D001694 3.2e-09 66.6 94 44.7
MBI19_g14894_MAGBIO Magnolia biondii HOM05D001707 ORTHO05D001694 3.2e-09 66.6 93 44.1
SEGI_16224 Sequoiadendron giganteum HOM05D001707 ORTHO05D001694 5.4e-09 65.9 94 39.4
Actinidia35400 Actinidia chinensis HOM05D001707 ORTHO05D001694 7.0e-09 65.5 94 46.8
ECA240G1088 Erigeron canadensis HOM05D001707 ORTHO05D001694 7.0e-09 65.5 94 42.6
PSO675G8484 Papaver somniferum HOM05D001707 ORTHO05D001694 9.2e-09 65.1 66 50.0
ECA246G3856 Erigeron canadensis HOM05D001707 ORTHO05D001694 1.2e-08 64.7 94 44.7
HanXRQChr05g0159891 Helianthus annuus HOM05D001707 ORTHO05D001694 1.2e-08 64.7 94 46.8
MSTRG.13020 Avicennia marina HOM05D001707 ORTHO05D001694 2.1e-08 63.9 94 44.7
Solyc07g065490.3 Solanum lycopersicum HOM05D001707 ORTHO05D001694 2.1e-08 63.9 94 45.7
Sopen07g033700 Solanum pennellii HOM05D001707 ORTHO05D001694 2.1e-08 63.9 94 45.7
PGSC0003DMG400022282 Solanum tuberosum HOM05D001707 ORTHO05D001694 2.1e-08 63.9 94 45.7
TAR622G1215 Trochodendron aralioides HOM05D001707 ORTHO05D001694 2.1e-08 63.9 94 39.4
Actinidia37156 Actinidia chinensis HOM05D001707 ORTHO05D001694 2.7e-08 63.5 96 44.8
PSO541G1067 Papaver somniferum HOM05D001707 ORTHO05D001694 2.7e-08 63.5 66 48.5
Actinidia05012 Actinidia chinensis HOM05D001707 ORTHO05D001694 3.5e-08 63.2 94 44.7
HanXRQChr13g0408161 Helianthus annuus HOM05D001707 ORTHO05D001694 3.5e-08 63.2 94 42.6
TAR624G0053 Trochodendron aralioides HOM05D001707 ORTHO05D001694 4.6e-08 62.8 95 44.2
GSVIVG01014672001 Vitis vinifera HOM05D001707 ORTHO05D001694 4.6e-08 62.8 94 44.7
SGA_v2.0_scaffold171G38878 Striga asiatica HOM05D001707 ORTHO05D001694 6.0e-08 62.4 94 42.6
Cc05_g14890 Coffea canephora HOM05D001707 ORTHO05D001694 7.8e-08 62.0 94 43.6
HanXRQChr03g0074051 Helianthus annuus HOM05D001707 ORTHO05D001694 7.8e-08 62.0 94 42.6
Lsat_1_v5_gn_9_90080 Lactuca sativa HOM05D001707 ORTHO05D001694 1.0e-07 61.6 94 40.4
Manes.03G140900 Manihot esculenta HOM05D001707 ORTHO05D001694 1.0e-07 61.6 94 42.6
QL08p004228 Quercus lobata HOM05D001707 ORTHO05D001694 1.0e-07 61.6 94 42.6
Rhsim04G0012800 Rhododendron simsii HOM05D001707 ORTHO05D001694 1.0e-07 61.6 94 43.6
Solyc10g006000.4 Solanum lycopersicum HOM05D001707 ORTHO05D001694 1.0e-07 61.6 96 41.7
Sopen10g001960 Solanum pennellii HOM05D001707 ORTHO05D001694 1.0e-07 61.6 96 41.7
CSS0002645 Camellia sinensis var. sinensis HOM05D001707 ORTHO05D001694 1.3e-07 61.2 94 43.6
CDE02G1752 Ceratophyllum demersum HOM05D001707 ORTHO05D001694 1.3e-07 61.2 94 43.6
Oeu005486.1 Olea europaea HOM05D001707 ORTHO05D001694 1.3e-07 61.2 64 50.0
Oeu049399.1 Olea europaea HOM05D001707 ORTHO05D001694 1.3e-07 61.2 94 41.5
Sc16g0008030 Simmondsia chinensis HOM05D001707 ORTHO05D001694 1.3e-07 61.2 94 42.6
CAN.G337.4 Capsicum annuum HOM05D001707 ORTHO05D001694 1.7e-07 60.8 94 43.6
DCAR_013228 Daucus carota HOM05D001707 ORTHO05D001694 1.7e-07 60.8 65 50.8
Nitab4.5_0003491g0070 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.7e-07 60.8 96 45.8
Nitab4.5_0006508g0020 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.7e-07 60.8 94 43.6
Cfa020198 Carpinus fangiana HOM05D001707 ORTHO05D001694 2.3e-07 60.5 94 42.6
CiPaw.12G137800 Carya illinoinensis HOM05D001707 ORTHO05D001694 2.3e-07 60.5 94 42.6
Peaxi162Scf01164g00129 Petunia axillaris HOM05D001707 ORTHO05D001694 2.3e-07 60.5 94 42.6
MSTRG.14484 Avicennia marina HOM05D001707 ORTHO05D001694 3.0e-07 60.1 64 53.1
Dinv40852 Davidia involucrata HOM05D001707 ORTHO05D001694 3.0e-07 60.1 157 33.1
Migut.H01758 Erythranthe guttata HOM05D001707 ORTHO05D001694 3.0e-07 60.1 94 42.6
TAR629G2834 Trochodendron aralioides HOM05D001707 ORTHO05D001694 3.0e-07 60.1 94 42.6
Dinv10327 Davidia involucrata HOM05D001707 ORTHO05D001694 3.9e-07 59.7 94 41.5
Lj8C178T12 Lonicera japonica HOM05D001707 ORTHO05D001694 3.9e-07 59.7 94 42.6
AT5G55660 Arabidopsis thaliana HOM05D001707 ORTHO05D001694 5.0e-07 59.3 65 52.3
CiPaw.11G203300 Carya illinoinensis HOM05D001707 ORTHO05D001694 5.0e-07 59.3 94 42.6
FvH4_3g29362 Fragaria vesca HOM05D001707 ORTHO05D001694 5.0e-07 59.3 62 51.6
FAN21G0111 Fragaria x ananassa HOM05D001707 ORTHO05D001694 5.0e-07 59.3 62 51.6
FAN25G3697 Fragaria x ananassa HOM05D001707 ORTHO05D001694 5.0e-07 59.3 62 51.6
Oeu041438.3 Olea europaea HOM05D001707 ORTHO05D001694 5.0e-07 59.3 66 48.5
unitig_61.g26372 Utricularia gibba HOM05D001707 ORTHO05D001694 5.0e-07 59.3 67 46.3
vmacro09650 Vaccinium macrocarpon HOM05D001707 ORTHO05D001694 5.0e-07 59.3 94 42.6
Aqoxy1G04255 Aquilegia oxysepala HOM05D001707 ORTHO05D001694 6.6e-07 58.9 94 41.5
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 6.6e-07 58.9 94 40.4
AUR62036448 Chenopodium quinoa HOM05D001707 ORTHO05D001694 6.6e-07 58.9 94 40.4
DCAR_017085 Daucus carota HOM05D001707 ORTHO05D001694 6.6e-07 58.9 95 41.1
FAN16G3081 Fragaria x ananassa HOM05D001707 ORTHO05D001694 6.6e-07 58.9 62 51.6
EL10Ac4g07585 Beta vulgaris HOM05D001707 ORTHO05D001694 8.6e-07 58.5 94 41.5
A10p12970 Brassica napus HOM05D001707 ORTHO05D001694 8.6e-07 58.5 62 48.4
BraA10t43391Z Brassica rapa HOM05D001707 ORTHO05D001694 8.6e-07 58.5 62 48.4
CAN.G732.10 Capsicum annuum HOM05D001707 ORTHO05D001694 8.6e-07 58.5 97 44.3
CDE05G1523 Ceratophyllum demersum HOM05D001707 ORTHO05D001694 8.6e-07 58.5 91 41.8
Mapoly0067s0068 Marchantia polymorpha HOM05D001707 ORTHO05D001694 8.6e-07 58.5 96 40.6
SGA_v2.0_scaffold42G15990 Striga asiatica HOM05D001707 ORTHO05D001694 8.6e-07 58.5 94 41.5
THA.LOC104813447 Tarenaya hassleriana HOM05D001707 ORTHO05D001694 8.6e-07 58.5 94 43.6
Aa31LG3G11600 Aethionema arabicum HOM05D001707 ORTHO05D001694 1.1e-06 58.2 64 48.4
Aqoxy3G01661 Aquilegia oxysepala HOM05D001707 ORTHO05D001694 1.1e-06 58.2 94 39.4
CDE02G2918 Ceratophyllum demersum HOM05D001707 ORTHO05D001694 1.1e-06 58.2 91 41.8
Eucgr.F02052 Eucalyptus grandis HOM05D001707 ORTHO05D001694 1.1e-06 58.2 66 47.0
FAN11G4026 Fragaria x ananassa HOM05D001707 ORTHO05D001694 1.1e-06 58.2 62 51.6
Gohir.D05G383400 Gossypium hirsutum HOM05D001707 ORTHO05D001694 1.1e-06 58.2 94 41.5
Gorai.009G450100 Gossypium raimondii HOM05D001707 ORTHO05D001694 1.1e-06 58.2 94 41.5
BcaC04g20208 Brassica carinata HOM05D001707 ORTHO05D001694 1.5e-06 57.8 62 48.4
C09p46670 Brassica napus HOM05D001707 ORTHO05D001694 1.5e-06 57.8 62 48.4
BolC9t57518H Brassica oleracea HOM05D001707 ORTHO05D001694 1.5e-06 57.8 62 48.4
Duzib268G1664 Durio zibethinus HOM05D001707 ORTHO05D001694 1.5e-06 57.8 94 40.4
Nitab4.5_0000461g0250 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.5e-06 57.8 94 42.6
Nitab4.5_0005906g0020 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.5e-06 57.8 96 43.8
SalBow1G7252 Salvia bowleyana HOM05D001707 ORTHO05D001694 1.5e-06 57.8 65 47.7
Sed0006520 Sechium edule HOM05D001707 ORTHO05D001694 1.5e-06 57.8 66 48.5
Atru.chr2.3683 Acer truncatum HOM05D001707 ORTHO05D001694 1.9e-06 57.4 94 40.4
Ah.06g181390 Amaranthus hybridus HOM05D001707 ORTHO05D001694 1.9e-06 57.4 94 40.4
A01p17870 Brassica napus HOM05D001707 ORTHO05D001694 1.9e-06 57.4 64 46.9
BraA01t01743Z Brassica rapa HOM05D001707 ORTHO05D001694 1.9e-06 57.4 64 46.9
CARHR268980 Cardamine hirsuta HOM05D001707 ORTHO05D001694 1.9e-06 57.4 62 50.0
AUR62017093 Chenopodium quinoa HOM05D001707 ORTHO05D001694 1.9e-06 57.4 94 40.4
ClCG10G004270 Citrullus lanatus HOM05D001707 ORTHO05D001694 1.9e-06 57.4 66 48.5
MELO3C014102.2 Cucumis melo HOM05D001707 ORTHO05D001694 1.9e-06 57.4 66 48.5
CsaV3_3G004070 Cucumis sativus L. HOM05D001707 ORTHO05D001694 1.9e-06 57.4 66 48.5
Gohir.A04G006100 Gossypium hirsutum HOM05D001707 ORTHO05D001694 1.9e-06 57.4 94 41.5
Lalb_Chr15g0082041 Lupinus albus HOM05D001707 ORTHO05D001694 1.9e-06 57.4 96 39.6
Phvul.006G056900 Phaseolus vulgaris HOM05D001707 ORTHO05D001694 1.9e-06 57.4 94 40.4
PGR083G1897 Punica granatum HOM05D001707 ORTHO05D001694 1.9e-06 57.4 67 46.3
unitig_62.g23299 Utricularia gibba HOM05D001707 ORTHO05D007626 1.9e-06 57.4 96 41.7
VMungo0540G1473 Vigna mungo HOM05D001707 ORTHO05D001694 1.9e-06 57.4 94 40.4
MSTRG.9335 Avicennia marina HOM05D001707 ORTHO05D001694 2.5e-06 57.0 98 42.9
C01p22680 Brassica napus HOM05D001707 ORTHO05D001694 2.5e-06 57.0 64 46.9
BolC1t02198H Brassica oleracea HOM05D001707 ORTHO05D001694 2.5e-06 57.0 64 46.9
Thhalv10012729m.g Eutrema salsugineum HOM05D001707 ORTHO05D001694 2.5e-06 57.0 65 49.2
Glyma.18G077600 Glycine max HOM05D001707 ORTHO05D001694 2.5e-06 57.0 94 40.4
Nn3g16374 Nelumbo nucifera HOM05D001707 ORTHO05D001694 2.5e-06 57.0 94 39.4
THA.LOC104817704 Tarenaya hassleriana HOM05D001707 ORTHO05D001694 2.5e-06 57.0 94 42.6
Ah.11g046370 Amaranthus hybridus HOM05D001707 ORTHO05D001694 3.3e-06 56.6 94 40.4
arahy.Tifrunner.gnm1.ann1.A9Q4ZU Arachis hypogaea HOM05D001707 ORTHO05D001694 3.3e-06 56.6 94 40.4
Hma1.2p1_1559F.1_g290650 Hydrangea macrophylla HOM05D001707 ORTHO05D001694 3.3e-06 56.6 92 42.4
LjContig00081g0007565 Lotus japonicus HOM05D001707 ORTHO05D001694 3.3e-06 56.6 94 40.4
Nitab4.5_0004670g0030 Nicotiana tabacum HOM05D001707 ORTHO05D001694 3.3e-06 56.6 92 41.3
TAR626G0122 Trochodendron aralioides HOM05D001707 ORTHO05D001694 3.3e-06 56.6 94 39.4
Dinv23178 Davidia involucrata HOM05D001707 ORTHO05D001694 4.3e-06 56.2 82 41.5
Glyma.18G077700 Glycine max HOM05D001707 ORTHO05D001694 4.3e-06 56.2 94 39.4
Phvul.006G056800 Phaseolus vulgaris HOM05D001707 ORTHO05D001694 4.3e-06 56.2 94 40.4
PGR083G0672 Punica granatum HOM05D001707 ORTHO05D001694 4.3e-06 56.2 66 47.0
AL8G31240 Arabidopsis lyrata HOM05D001707 ORTHO05D001694 5.6e-06 55.8 62 48.4
BcaB08g35929 Brassica carinata HOM05D001707 ORTHO05D001694 5.6e-06 55.8 62 48.4
A02p09580 Brassica napus HOM05D001707 ORTHO05D001694 5.6e-06 55.8 62 48.4
BraA02t06022Z Brassica rapa HOM05D001707 ORTHO05D001694 5.6e-06 55.8 62 48.4
Manes.15G060500 Manihot esculenta HOM05D001707 ORTHO05D001694 5.6e-06 55.8 94 39.4
Oeu014355.1 Olea europaea HOM05D001707 ORTHO05D001694 5.6e-06 55.8 64 46.9
Potri.011G093200 Populus trichocarpa HOM05D001707 ORTHO05D001694 5.6e-06 55.8 94 39.4
MSTRG.4611 Avicennia marina HOM05D001707 ORTHO05D001694 7.3e-06 55.5 94 40.4
Carub.0007s1424 Capsella rubella HOM05D001707 ORTHO05D001694 7.3e-06 55.5 62 46.8
Glyma.08G329200 Glycine max HOM05D001707 ORTHO05D001694 7.3e-06 55.5 94 38.3
Peaxi162Scf00516g00221 Petunia axillaris HOM05D001707 ORTHO05D001694 7.3e-06 55.5 94 40.4
SHI26537 Sapria himalayana HOM05D001707 ORTHO05D001694 7.3e-06 55.5 64 48.4
Sp6g17570 Schrenkiella parvula HOM05D001707 ORTHO05D001694 7.3e-06 55.5 62 46.8
TAR371G0816 Trochodendron aralioides HOM05D001707 ORTHO05D001694 7.3e-06 55.5 86 43.0
Aa31LG5G12000 Aethionema arabicum HOM05D001707 ORTHO05D001694 9.5e-06 55.1 97 40.2
Ca_22135_v3 Cicer arietinum L. HOM05D001707 ORTHO05D001694 9.5e-06 55.1 94 39.4
DCAR_016373 Daucus carota HOM05D001707 ORTHO05D001694 9.5e-06 55.1 94 40.4
Duzib170G0335 Durio zibethinus HOM05D001707 ORTHO05D001694 9.5e-06 55.1 96 40.6
Glyma.08G329100 Glycine max HOM05D001707 ORTHO05D001694 9.5e-06 55.1 94 40.4
Gohir.D12G193400 Gossypium hirsutum HOM05D001707 ORTHO05D001694 9.5e-06 55.1 96 41.7
Gorai.008G208200 Gossypium raimondii HOM05D001707 ORTHO05D001694 9.5e-06 55.1 96 41.7
Os03g0596900 Oryza sativa ssp. japonica HOM05D001707 ORTHO05D001694 9.5e-06 55.1 94 40.4
Psat5g168800 Pisum sativum HOM05D001707 ORTHO05D001694 9.5e-06 55.1 94 39.4
Thecc.07G014600 Theobroma cacao HOM05D001707 ORTHO05D001694 9.5e-06 55.1 94 38.3


User provided reference genes

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