Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.5e-106 389.4 189 100.0
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.9e-26 121.3 57 91.2
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.5e-21 107.1 53 84.9
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 2.6e-21 106.3 57 77.2
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 4.5e-21 105.5 58 74.1
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 5.8e-21 105.1 67 64.2
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 8.4e-20 101.3 56 71.4
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 1.1e-19 100.9 57 71.9
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 1.4e-19 100.5 53 79.2
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 2.5e-19 99.8 53 75.5
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 3.2e-19 99.4 55 74.5
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 5.5e-19 98.6 53 75.5
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 5.5e-19 98.6 53 75.5
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 5.5e-19 98.6 53 75.5
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 7.1e-19 98.2 53 73.6
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 9.3e-19 97.8 53 73.6
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 9.3e-19 97.8 53 75.5
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 9.3e-19 97.8 53 71.7
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 9.3e-19 97.8 53 73.6
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.3e-19 97.8 53 73.6
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.3e-19 97.8 53 73.6
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 9.3e-19 97.8 53 75.5
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 1.2e-18 97.4 55 72.7
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.2e-18 97.4 53 73.6
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.2e-18 97.4 53 73.6
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 1.2e-18 97.4 53 73.6
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 1.2e-18 97.4 53 73.6
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.2e-18 97.4 53 73.6
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.6e-18 97.1 53 71.7
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.6e-18 97.1 53 73.6
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.6e-18 97.1 53 75.5
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 73.6
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 73.6
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 73.6
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 73.6
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 71.7
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 71.7
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 71.7
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 73.6
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 73.6
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 2.1e-18 96.7 53 73.6
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 2.7e-18 96.3 53 71.7
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 3.5e-18 95.9 53 71.7
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 3.5e-18 95.9 53 71.7
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 3.5e-18 95.9 53 71.7
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 3.5e-18 95.9 53 71.7
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 4.6e-18 95.5 53 71.7
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.6e-18 95.5 53 71.7
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 4.6e-18 95.5 53 69.8
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 4.6e-18 95.5 53 73.6
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 4.6e-18 95.5 53 71.7
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 6.0e-18 95.1 53 75.5
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 6.0e-18 95.1 53 73.6
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 6.0e-18 95.1 53 69.8
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 6.0e-18 95.1 53 69.8
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 6.0e-18 95.1 53 71.7
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 6.0e-18 95.1 53 71.7
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 6.0e-18 95.1 53 69.8
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 6.0e-18 95.1 53 71.7
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 6.0e-18 95.1 53 71.7
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 69.8
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 69.8
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 69.8
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 69.8
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 69.8
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 69.8
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 71.7
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 71.7
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 69.8
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 73.6
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 73.6
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 71.7
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 7.9e-18 94.7 53 73.6
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.0e-17 94.4 52 71.2
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 1.0e-17 94.4 53 71.7
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-17 94.4 64 67.2
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.0e-17 94.4 57 73.7
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.0e-17 94.4 53 67.9
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 1.3e-17 94.0 53 67.9
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.3e-17 94.0 53 67.9
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 1.3e-17 94.0 53 69.8
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 1.3e-17 94.0 53 73.6
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 1.3e-17 94.0 53 69.8
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.3e-17 93.2 53 69.8
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 2.3e-17 93.2 53 67.9
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.3e-17 93.2 53 71.7
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 3.9e-17 92.4 53 67.9
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 6.7e-17 91.7 53 69.8
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 6.7e-17 91.7 74 63.5
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 8.7e-17 91.3 53 67.9
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 8.7e-17 91.3 53 69.8
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 1.1e-16 90.9 53 67.9
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.1e-16 90.9 53 67.9
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 1.1e-16 90.9 53 67.9
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 1.1e-16 90.9 79 55.7
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.5e-16 90.5 56 69.6
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 1.5e-16 90.5 53 75.5
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.5e-16 89.7 57 64.9
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.5e-16 89.7 65 64.6
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.4e-16 88.2 57 70.2
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.4e-16 88.2 57 70.2
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 7.4e-16 88.2 57 66.7
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 1.3e-15 87.4 53 66.0
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.2e-15 85.1 57 68.4
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 1.1e-14 84.3 58 63.8
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.1e-14 84.3 58 63.8
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-14 83.6 58 63.8
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 3.1e-14 82.8 53 66.0
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 3.1e-14 82.8 53 66.0
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.3e-14 82.0 58 62.1
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 9.0e-14 81.3 57 61.4
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 2.6e-13 79.7 58 60.3
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 2.6e-13 79.7 58 60.3
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 4.5e-13 79.0 56 58.9
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.6e-13 78.2 58 62.1
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 8.4e-12 74.7 53 56.6
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-11 72.8 54 63.0
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-11 72.8 54 63.0
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-11 72.8 54 63.0
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-11 72.8 54 63.0
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-11 72.8 54 63.0
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-11 72.8 54 63.0
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-11 72.8 54 63.0
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 4.2e-11 72.4 52 59.6
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.1e-11 71.6 54 61.1
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 9.3e-11 71.2 53 58.5
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 9.3e-11 71.2 53 58.5
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 2.1e-10 70.1 56 53.6
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 2.7e-10 69.7 53 54.7
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 2.7e-10 69.7 53 54.7
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 3.5e-10 69.3 53 52.8
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 3.5e-10 69.3 53 52.8
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 3.5e-10 69.3 53 52.8
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 1.0e-09 67.8 53 54.7
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.9e-08 63.5 58 48.3
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 2.8e-07 59.7 54 44.4
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 1.1e-06 57.8 54 40.7
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-06 57.4 37 67.6
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 9.0e-06 54.7 31 64.5


User provided reference genes

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