Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 3.5e-103 378.3 184 100.0
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 8.4e-33 144.4 130 50.8
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 2.5e-32 142.9 152 45.4
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 1.3e-30 137.1 131 51.9
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 2.3e-30 136.3 93 60.2
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 3.9e-30 135.6 93 59.1
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 1.9e-29 133.3 134 48.5
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 4.3e-29 132.1 93 59.1
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 4.3e-29 132.1 93 60.2
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 5.7e-29 131.7 93 61.3
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 7.4e-29 131.3 93 59.1
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 7.4e-29 131.3 93 59.1
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 7.4e-29 131.3 93 59.1
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 9.7e-29 131.0 101 54.5
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 9.7e-29 131.0 132 47.0
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 1.3e-28 130.6 111 54.1
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 1.3e-28 130.6 111 54.1
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 1.6e-28 130.2 93 60.2
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 2.2e-28 129.8 93 59.1
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 2.2e-28 129.8 99 56.6
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 2.8e-28 129.4 111 54.1
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 2.8e-28 129.4 99 56.6
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 2.8e-28 129.4 131 46.6
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 2.8e-28 129.4 93 58.1
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 2.8e-28 129.4 93 59.1
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 2.8e-28 129.4 93 59.1
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 3.7e-28 129.0 103 58.3
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 3.7e-28 129.0 103 58.3
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 3.7e-28 129.0 109 56.0
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 3.7e-28 129.0 137 45.3
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 4.8e-28 128.6 93 57.0
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 6.3e-28 128.3 93 55.9
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 6.3e-28 128.3 106 54.7
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 6.3e-28 128.3 93 58.1
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 8.2e-28 127.9 93 57.0
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 8.2e-28 127.9 93 59.1
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 8.2e-28 127.9 99 54.5
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 8.2e-28 127.9 130 46.2
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 1.1e-27 127.5 93 58.1
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 1.1e-27 127.5 93 57.0
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 1.1e-27 127.5 93 58.1
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 1.4e-27 127.1 142 45.1
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 1.4e-27 127.1 142 45.1
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 1.8e-27 126.7 93 58.1
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 1.8e-27 126.7 93 57.0
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 2.4e-27 126.3 93 58.1
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 2.4e-27 126.3 100 58.0
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 2.4e-27 126.3 132 47.7
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 2.4e-27 126.3 95 58.9
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 3.1e-27 125.9 95 57.9
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 3.1e-27 125.9 93 58.1
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 3.1e-27 125.9 93 58.1
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 4.1e-27 125.6 131 48.9
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 4.1e-27 125.6 142 45.1
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 4.1e-27 125.6 95 57.9
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 4.1e-27 125.6 95 57.9
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 5.3e-27 125.2 93 57.0
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 5.3e-27 125.2 93 57.0
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 5.3e-27 125.2 93 58.1
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 6.9e-27 124.8 93 57.0
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 6.9e-27 124.8 93 57.0
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 9.0e-27 124.4 93 59.1
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 9.0e-27 124.4 93 59.1
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 9.0e-27 124.4 93 59.1
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 9.0e-27 124.4 93 59.1
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 9.0e-27 124.4 94 55.3
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 9.0e-27 124.4 99 52.5
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 9.0e-27 124.4 99 52.5
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 9.0e-27 124.4 95 57.9
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 9.0e-27 124.4 95 57.9
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 9.0e-27 124.4 93 53.8
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 9.0e-27 124.4 93 57.0
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 1.2e-26 124.0 144 45.1
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 1.2e-26 124.0 93 58.1
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 1.2e-26 124.0 101 51.5
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 1.5e-26 123.6 93 57.0
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 2.0e-26 123.2 99 53.5
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 2.6e-26 122.9 93 58.1
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 2.6e-26 122.9 93 55.9
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 2.6e-26 122.9 93 58.1
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 2.6e-26 122.9 143 44.8
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 2.6e-26 122.9 93 55.9
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 2.6e-26 122.9 93 57.0
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 2.6e-26 122.9 93 59.1
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.4e-26 122.5 134 45.5
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 3.4e-26 122.5 95 56.8
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 3.4e-26 122.5 93 55.9
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 3.4e-26 122.5 112 50.0
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 4.5e-26 122.1 93 58.1
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 4.5e-26 122.1 160 42.5
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 4.5e-26 122.1 94 58.5
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.5e-26 122.1 93 53.8
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 5.9e-26 121.7 93 57.0
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 5.9e-26 121.7 93 55.9
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 7.7e-26 121.3 155 41.9
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 7.7e-26 121.3 93 54.8
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 1.0e-25 120.9 93 54.8
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 1.3e-25 120.6 141 42.6
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 1.3e-25 120.6 93 54.8
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 1.7e-25 120.2 93 57.0
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 1.7e-25 120.2 93 57.0
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 1.7e-25 120.2 157 39.5
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 1.7e-25 120.2 93 53.8
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 2.2e-25 119.8 157 39.5
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 2.2e-25 119.8 93 57.0
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 2.9e-25 119.4 94 56.4
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 2.9e-25 119.4 93 52.7
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 2.9e-25 119.4 93 52.7
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 2.9e-25 119.4 93 53.8
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 2.9e-25 119.4 130 43.8
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 5.0e-25 118.6 93 52.7
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 8.5e-25 117.9 93 55.9
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 8.5e-25 117.9 93 55.9
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 1.1e-24 117.5 93 55.9
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 1.4e-24 117.1 93 55.9
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 1.4e-24 117.1 93 55.9
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 1.9e-24 116.7 92 54.3
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 2.5e-24 116.3 93 55.9
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 3.2e-24 115.9 93 55.9
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 5.5e-24 115.2 130 43.1
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 7.2e-24 114.8 93 55.9
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.6e-23 113.6 157 36.3
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.1e-23 113.2 93 51.6
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 1.8e-22 110.2 133 43.6
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 2.3e-22 109.8 114 44.7
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 3.0e-22 109.4 83 55.4
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.0e-22 109.4 130 43.8
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 3.9e-22 109.0 93 53.8
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 5.1e-22 108.6 110 48.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 8.8e-22 107.8 101 48.5
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 1.1e-21 107.5 79 59.5
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 1.5e-21 107.1 79 55.7
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 5.7e-21 105.1 80 55.0
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 2.8e-20 102.8 77 53.2
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 4.8e-20 102.1 82 50.0
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 4.8e-20 102.1 93 51.6
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 6.9e-19 98.2 69 59.4
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 7.7e-18 94.7 46 91.3
DCAR_028625 Daucus carota HOM05D003906 ORTHO05D004776 1.4e-16 90.5 71 56.3
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-16 88.6 145 33.8
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 9.4e-16 87.8 92 46.7
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 2.1e-15 86.7 93 44.1
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 3.6e-15 85.9 94 45.7
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 6.1e-15 85.1 92 45.7
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.0e-14 84.3 99 40.4
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 1.5e-13 80.5 92 38.0
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 2.6e-13 79.7 91 44.0
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.3e-13 79.3 102 40.2
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.3e-13 79.3 102 40.2
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.3e-13 79.3 102 40.2
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 5.7e-13 78.6 92 44.6
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 1.3e-12 77.4 87 44.8
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 3.7e-12 75.9 93 41.9
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.1e-11 74.3 86 41.9
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 2.6e-10 69.7 116 36.2
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 1.3e-09 67.4 99 37.4
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 3.2e-08 62.8 84 40.5


User provided reference genes

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