Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33563 Sequoiadendron giganteum HOM05D001988 ORTHO05D387281 6.1e-45 183.7 89 100.0
SEGI_23026 Sequoiadendron giganteum HOM05D001988 ORTHO05D006298 6.8e-20 100.5 71 69.0
BcaB03g13337 Brassica carinata HOM05D001988 ORTHO05D006298 1.1e-14 83.2 71 53.5
BcaC07g42533 Brassica carinata HOM05D001988 ORTHO05D006298 1.5e-14 82.8 71 53.5
Ciclev10028074m.g Citrus clementina HOM05D001988 ORTHO05D006298 3.3e-14 81.6 71 52.1
Thhalv10007194m.g Eutrema salsugineum HOM05D001988 ORTHO05D006298 3.3e-14 81.6 71 53.5
Glyma.12G095400 Glycine max HOM05D001988 ORTHO05D006298 4.2e-14 81.3 71 53.5
Psat7g204840 Pisum sativum HOM05D001988 ORTHO05D006298 4.2e-14 81.3 71 54.9
MELO3C026106.2 Cucumis melo HOM05D001988 ORTHO05D006298 5.5e-14 80.9 71 53.5
Sed0023260 Sechium edule HOM05D001988 ORTHO05D006298 5.5e-14 80.9 71 53.5
TPR.G4623 Trifolium pratense HOM05D001988 ORTHO05D006298 5.5e-14 80.9 71 53.5
Atru.chr3.3098 Acer truncatum HOM05D001988 ORTHO05D006298 7.2e-14 80.5 71 53.5
MELO3C008925.2 Cucumis melo HOM05D001988 ORTHO05D006298 7.2e-14 80.5 71 53.5
CsaV3_1G015690 Cucumis sativus L. HOM05D001988 ORTHO05D006298 7.2e-14 80.5 71 52.1
CsaV3_4G030600 Cucumis sativus L. HOM05D001988 ORTHO05D006298 7.2e-14 80.5 71 53.5
Medtr4g050490 Medicago truncatula HOM05D001988 ORTHO05D006298 7.2e-14 80.5 71 54.9
Ca_02972_v3 Cicer arietinum L. HOM05D001988 ORTHO05D006298 9.5e-14 80.1 71 54.9
A08p35180 Brassica napus HOM05D001988 ORTHO05D006298 1.2e-13 79.7 71 52.1
BraA08t35427Z Brassica rapa HOM05D001988 ORTHO05D006298 1.2e-13 79.7 71 52.1
FvH4_3g26290 Fragaria vesca HOM05D001988 ORTHO05D006298 1.2e-13 79.7 71 50.7
FAN21G2899 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.2e-13 79.7 71 50.7
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.2e-13 79.7 71 50.7
ClCG04G002140 Citrullus lanatus HOM05D001988 ORTHO05D006298 1.6e-13 79.3 71 52.1
AT1G08410 Arabidopsis thaliana HOM05D001988 ORTHO05D006298 2.1e-13 79.0 71 52.1
arahy.Tifrunner.gnm1.ann1.Q3UIYI Arachis hypogaea HOM05D001988 ORTHO05D006298 2.1e-13 79.0 71 50.7
BcaC07g38386 Brassica carinata HOM05D001988 ORTHO05D006298 2.1e-13 79.0 71 50.7
C08p11420 Brassica napus HOM05D001988 ORTHO05D006298 2.1e-13 79.0 71 50.7
BolC8t48823H Brassica oleracea HOM05D001988 ORTHO05D006298 2.1e-13 79.0 71 50.7
Eucgr.J00579 Eucalyptus grandis HOM05D001988 ORTHO05D006298 2.1e-13 79.0 71 53.5
Sp1g07060 Schrenkiella parvula HOM05D001988 ORTHO05D006298 2.1e-13 79.0 71 52.1
VMungo1127G1842 Vigna mungo HOM05D001988 ORTHO05D006298 2.1e-13 79.0 71 52.1
arahy.Tifrunner.gnm1.ann1.JS7C8X Arachis hypogaea HOM05D001988 ORTHO05D006298 2.8e-13 78.6 71 50.7
Lj3g0025777 Lotus japonicus HOM05D001988 ORTHO05D006298 2.8e-13 78.6 71 50.7
Sed0009678 Sechium edule HOM05D001988 ORTHO05D006298 2.8e-13 78.6 71 56.3
AL4G21100 Arabidopsis lyrata HOM05D001988 ORTHO05D006298 3.6e-13 78.2 71 53.5
Glyma.11G175746 Glycine max HOM05D001988 ORTHO05D006298 3.6e-13 78.2 71 50.7
GSVIVG01037592001 Vitis vinifera HOM05D001988 ORTHO05D006298 3.6e-13 78.2 71 49.3
Actinidia07284 Actinidia chinensis HOM05D001988 ORTHO05D006298 4.7e-13 77.8 71 50.7
AL1G18820 Arabidopsis lyrata HOM05D001988 ORTHO05D006298 4.7e-13 77.8 71 50.7
ClCG01G010890 Citrullus lanatus HOM05D001988 ORTHO05D006298 4.7e-13 77.8 71 52.1
Prupe.1G535500 Prunus persica HOM05D001988 ORTHO05D006298 4.7e-13 77.8 71 50.7
RcHm_v2.0_Chr5g0048681 Rosa chinensis HOM05D001988 ORTHO05D006298 4.7e-13 77.8 71 49.3
Aqoxy2G00626 Aquilegia oxysepala HOM05D001988 ORTHO05D006298 6.1e-13 77.4 71 49.3
Carub.0001s0776 Capsella rubella HOM05D001988 ORTHO05D006298 6.1e-13 77.4 71 50.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 6.1e-13 77.4 71 49.3
Glyma.13G312200 Glycine max HOM05D001988 ORTHO05D006298 6.1e-13 77.4 71 52.1
MBI12_g38624_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D006298 6.1e-13 77.4 71 52.1
CSS0034246 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D006298 8.0e-13 77.0 71 49.3
Lalb_Chr19g0136211 Lupinus albus HOM05D001988 ORTHO05D006298 8.0e-13 77.0 71 52.1
MD10G1037500 Malus domestica HOM05D001988 ORTHO05D006298 8.0e-13 77.0 71 50.7
Os12g0618300 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D006298 8.0e-13 77.0 71 53.5
CARHR008290 Cardamine hirsuta HOM05D001988 ORTHO05D006298 1.0e-12 76.6 71 49.3
Nn6g34638 Nelumbo nucifera HOM05D001988 ORTHO05D006298 1.0e-12 76.6 71 49.3
Rhsim13G0196900 Rhododendron simsii HOM05D001988 ORTHO05D006298 1.0e-12 76.6 71 52.1
THA.LOC104826449 Tarenaya hassleriana HOM05D001988 ORTHO05D006298 1.0e-12 76.6 71 50.7
Zm00001eb031980 Zea mays HOM05D001988 ORTHO05D006298 1.0e-12 76.6 71 54.9
QL01p019440 Quercus lobata HOM05D001988 ORTHO05D006298 1.4e-12 76.3 71 49.3
Hund18799 Selenicereus undatus HOM05D001988 ORTHO05D006298 1.4e-12 76.3 71 50.7
Cfa010182 Carpinus fangiana HOM05D001988 ORTHO05D006298 1.8e-12 75.9 71 47.9
Haze_23572 Corylus avellana HOM05D001988 ORTHO05D006298 1.8e-12 75.9 71 47.9
MD05G1034700 Malus domestica HOM05D001988 ORTHO05D006298 1.8e-12 75.9 71 49.3
TAR636G0458 Trochodendron aralioides HOM05D001988 ORTHO05D006298 1.8e-12 75.9 71 49.3
DCAR_006456 Daucus carota HOM05D001988 ORTHO05D006298 2.3e-12 75.5 71 47.9
Manes.04G062600 Manihot esculenta HOM05D001988 ORTHO05D006298 2.3e-12 75.5 71 47.9
Ah.15g092110 Amaranthus hybridus HOM05D001988 ORTHO05D006298 3.0e-12 75.1 71 47.9
Cpa.g.sc103.19 Carica papaya HOM05D001988 ORTHO05D006298 3.0e-12 75.1 71 47.9
Gorai.006G116700 Gossypium raimondii HOM05D001988 ORTHO05D006298 3.0e-12 75.1 71 49.3
Sc21g0006750 Simmondsia chinensis HOM05D001988 ORTHO05D006298 3.0e-12 75.1 71 50.7
CiPaw.13G129100 Carya illinoinensis HOM05D001988 ORTHO05D006298 4.0e-12 74.7 71 49.3
Glyma.12G189600 Glycine max HOM05D001988 ORTHO05D006298 4.0e-12 74.7 71 50.7
PSO339G1785 Papaver somniferum HOM05D001988 ORTHO05D006298 4.0e-12 74.7 71 50.7
SalBow3G3263 Salvia bowleyana HOM05D001988 ORTHO05D006298 4.0e-12 74.7 71 47.9
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 4.0e-12 74.7 71 50.7
Aa31sc314G30 Aethionema arabicum HOM05D001988 ORTHO05D006298 5.2e-12 74.3 71 52.1
Carub.0004s0777 Capsella rubella HOM05D001988 ORTHO05D006298 5.2e-12 74.3 71 50.7
AUR62001563 Chenopodium quinoa HOM05D001988 ORTHO05D006298 5.2e-12 74.3 71 47.9
AUR62020220 Chenopodium quinoa HOM05D001988 ORTHO05D006298 5.2e-12 74.3 71 47.9
COL.COLO4_25404 Corchorus olitorius HOM05D001988 ORTHO05D006298 5.2e-12 74.3 71 49.3
Duzib168G1815 Durio zibethinus HOM05D001988 ORTHO05D006298 5.2e-12 74.3 71 49.3
Lalb_Chr03g0028461 Lupinus albus HOM05D001988 ORTHO05D006298 5.2e-12 74.3 71 47.9
Thecc.09G271000 Theobroma cacao HOM05D001988 ORTHO05D006298 5.2e-12 74.3 71 49.3
Cc01_g07790 Coffea canephora HOM05D001988 ORTHO05D006298 6.8e-12 73.9 71 49.3
Nitab4.5_0002792g0050 Nicotiana tabacum HOM05D001988 ORTHO05D006298 6.8e-12 73.9 71 49.3
Phvul.011G099700 Phaseolus vulgaris HOM05D001988 ORTHO05D006298 6.8e-12 73.9 71 50.7
Pp3c3_21040 Physcomitrium patens HOM05D001988 ORTHO05D006298 6.8e-12 73.9 71 50.7
PGR119G1622 Punica granatum HOM05D001988 ORTHO05D006298 6.8e-12 73.9 71 49.3
Sp4g10000 Schrenkiella parvula HOM05D001988 ORTHO05D006298 6.8e-12 73.9 71 49.3
EL10Ac7g16285 Beta vulgaris HOM05D001988 ORTHO05D006298 8.9e-12 73.6 71 47.9
Dinv33543 Davidia involucrata HOM05D001988 ORTHO05D006298 8.9e-12 73.6 71 47.9
Gohir.A09G100300 Gossypium hirsutum HOM05D001988 ORTHO05D006298 8.9e-12 73.6 71 47.9
Peaxi162Scf00429g00122 Petunia axillaris HOM05D001988 ORTHO05D006298 8.9e-12 73.6 71 47.9
Potri.009G017000 Populus trichocarpa HOM05D001988 ORTHO05D006298 8.9e-12 73.6 71 47.9
AT2G27200 Arabidopsis thaliana HOM05D001988 ORTHO05D006298 1.2e-11 73.2 71 50.7
BcaC02g08272 Brassica carinata HOM05D001988 ORTHO05D006298 1.2e-11 73.2 71 49.3
C04p56520 Brassica napus HOM05D001988 ORTHO05D006298 1.2e-11 73.2 71 49.3
BolC4t27178H Brassica oleracea HOM05D001988 ORTHO05D006298 1.2e-11 73.2 71 49.3
CANSAT54G0076 Cannabis sativa HOM05D001988 ORTHO05D006298 1.2e-11 73.2 71 46.5
CARHR119700 Cardamine hirsuta HOM05D001988 ORTHO05D006298 1.2e-11 73.2 71 49.3
PGSC0003DMG400003001 Solanum tuberosum HOM05D001988 ORTHO05D006298 1.2e-11 73.2 71 47.9
vmacro03951 Vaccinium macrocarpon HOM05D001988 ORTHO05D006298 1.2e-11 73.2 71 49.3
Actinidia24258 Actinidia chinensis HOM05D001988 ORTHO05D006298 1.5e-11 72.8 71 46.5
A04p20690 Brassica napus HOM05D001988 ORTHO05D006298 1.5e-11 72.8 71 49.3
BraA04t17642Z Brassica rapa HOM05D001988 ORTHO05D006298 1.5e-11 72.8 71 49.3
Sabra09G0009700 Salix brachista HOM05D001988 ORTHO05D006298 1.5e-11 72.8 71 47.9
SMO174G0010 Selaginella moellendorffii HOM05D001988 ORTHO05D006298 1.5e-11 72.8 71 50.7
ATR0006G002 Amborella trichopoda HOM05D001988 ORTHO05D006298 2.0e-11 72.4 71 49.3
Nitab4.5_0007630g0020 Nicotiana tabacum HOM05D001988 ORTHO05D006298 2.0e-11 72.4 71 47.9
unitig_699.g19173 Utricularia gibba HOM05D001988 ORTHO05D006298 2.0e-11 72.4 71 49.3
BcaB06g28123 Brassica carinata HOM05D001988 ORTHO05D006298 2.6e-11 72.0 71 49.3
CDE06G0259 Ceratophyllum demersum HOM05D001988 ORTHO05D006298 2.6e-11 72.0 71 49.3
Hma1.2p1_0101F.1_g049570 Hydrangea macrophylla HOM05D001988 ORTHO05D006298 3.4e-11 71.6 71 46.5
Solyc11g071910.2 Solanum lycopersicum HOM05D001988 ORTHO05D006298 3.4e-11 71.6 71 47.9
Sopen11g029580 Solanum pennellii HOM05D001988 ORTHO05D006298 3.4e-11 71.6 71 47.9
SGA_v2.0_scaffold268G46203 Striga asiatica HOM05D001988 ORTHO05D006298 3.4e-11 71.6 71 47.9
ECA238G3826 Erigeron canadensis HOM05D001988 ORTHO05D006298 4.4e-11 71.2 71 45.1
MSTRG.17675 Avicennia marina HOM05D001988 ORTHO05D006298 5.7e-11 70.9 71 46.5
Oeu051473.1 Olea europaea HOM05D001988 ORTHO05D006298 5.7e-11 70.9 71 45.1
PSO384G2941 Papaver somniferum HOM05D001988 ORTHO05D006298 5.7e-11 70.9 71 49.3
Aa31LG5G8630 Aethionema arabicum HOM05D001988 ORTHO05D006298 7.5e-11 70.5 71 46.5
Dinv18851 Davidia involucrata HOM05D001988 ORTHO05D006298 7.5e-11 70.5 71 47.9
Lsat_1_v5_gn_2_35440 Lactuca sativa HOM05D001988 ORTHO05D006298 7.5e-11 70.5 71 43.7
HanXRQChr14g0431711 Helianthus annuus HOM05D001988 ORTHO05D006298 1.3e-10 69.7 71 43.7
Migut.G01069 Erythranthe guttata HOM05D001988 ORTHO05D006298 1.7e-10 69.3 71 45.1
Migut.N02439 Erythranthe guttata HOM05D001988 ORTHO05D006298 1.7e-10 69.3 71 45.1
Thhalv10001955m.g Eutrema salsugineum HOM05D001988 ORTHO05D006298 1.7e-10 69.3 71 47.9
Mapoly0045s0113 Marchantia polymorpha HOM05D001988 ORTHO05D006298 1.1e-09 66.6 71 45.1
AagrBONN_evm.TU.Sc2ySwM_344.3830 Anthoceros agrestis HOM05D001988 ORTHO05D006298 1.8e-09 65.9 71 43.7
Atru.chr3.3101 Acer truncatum HOM05D001988 ORTHO05D006298 3.5e-08 61.6 65 43.1
HPP92_017674 Vanilla planifolia HOM05D001988 ORTHO05D006298 1.3e-07 59.7 71 42.3
Gohir.D09G099733 Gossypium hirsutum HOM05D001988 ORTHO05D006298 8.6e-07 57.0 53 47.2


User provided reference genes

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