Gene: AT1G08410

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G08410
  • Transcript Identifier AT1G08410.1
  • Gene Type Coding gene
  • Location Chr1 : 2646307-2649106 : positive

Gene Family Information

  • ID HOM05D001988
  • #Genes/#Species 333/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G08410.1
  • Alias LSG1-2,yeast Lsg1 orthologue 2
  • uniprot Q9SJF1

Descriptions

  • Description P-loop containing nucleoside triphosphate hydrolases superfamily protein
  • Computational description P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1); Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109; Bacteria - 4700; Metazoa - 622; Fungi - 502; Plants - 285; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000012
IMP
Gene Ontologyregulation of auxin polar transport1
GO:0090070
IMP
Gene Ontologypositive regulation of ribosome biogenesis1
GO:0048825
IMP
Gene Ontologycotyledon development2
GO:0048366
IMP
Gene Ontologyleaf development2
GO:0042254
IMP
Gene Ontologyribosome biogenesis2
GO:0006364
IMP
Gene OntologyrRNA processing2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
GOA DatabaseGTPase activity
GO:0003924
IBA
Gene OntologyGTPase activity3
GO:0003924
IEA
InterProGTPase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0043022
IDA
Gene Ontologyribosome binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
IBA
Gene Ontologycytosol1 3
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005730
IDA
Gene Ontologynucleolus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023179 GTP-binding protein, orthogonal bundle domain superfamily
IPR043358 Ras GTPase GNL1-like
IPR006073 GTP binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
17.1.2.2.3.1 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.ribosome assembly GTPase (LSG1)