Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.4e-267 924.1 472 100.0
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 7.3e-198 694.1 428 82.5
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 9.6e-198 693.7 428 82.2
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.3e-197 693.3 429 82.5
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.6e-197 693.0 429 82.5
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 3.6e-197 691.8 425 83.5
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.6e-197 691.8 421 84.1
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 8.1e-197 690.6 425 82.6
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 8.1e-197 690.6 425 83.1
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.8e-196 689.5 429 81.6
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.4e-196 689.1 437 81.2
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 9.0e-196 687.2 424 82.3
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 9.0e-196 687.2 427 81.7
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.2e-195 686.8 423 82.3
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 1.5e-195 686.4 426 81.7
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.5e-195 686.4 429 82.1
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 2.0e-195 686.0 428 81.8
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.0e-195 686.0 421 83.6
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 2.0e-195 686.0 426 81.0
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 2.6e-195 685.6 424 81.6
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.4e-195 685.3 428 81.5
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 3.4e-195 685.3 424 81.8
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 3.4e-195 685.3 424 81.8
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 3.4e-195 685.3 424 81.8
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 4.5e-195 684.9 429 81.1
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 4.5e-195 684.9 426 82.6
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 5.8e-195 684.5 428 82.0
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 9.9e-195 683.7 424 81.6
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 9.9e-195 683.7 426 81.9
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.3e-194 683.3 425 81.9
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.7e-194 682.9 429 82.1
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.7e-194 682.9 426 81.0
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 2.2e-194 682.6 424 81.4
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 2.2e-194 682.6 429 81.6
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 2.2e-194 682.6 424 81.4
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.9e-194 682.2 424 81.8
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.9e-194 682.2 429 81.1
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 2.9e-194 682.2 424 81.1
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 3.8e-194 681.8 429 81.1
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 3.8e-194 681.8 428 81.1
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 6.4e-194 681.0 423 81.8
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 1.1e-193 680.2 421 81.5
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 1.4e-193 679.9 426 81.2
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.9e-193 679.5 429 80.2
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.9e-193 679.5 429 82.5
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.9e-193 679.5 429 80.4
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.9e-193 679.5 446 79.1
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 2.4e-193 679.1 424 82.5
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 2.4e-193 679.1 424 82.3
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 2.4e-193 679.1 429 82.3
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 3.2e-193 678.7 424 80.9
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 4.2e-193 678.3 421 82.2
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 4.2e-193 678.3 429 81.4
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 4.2e-193 678.3 428 81.3
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 7.1e-193 677.6 424 81.4
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 9.3e-193 677.2 429 81.6
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 9.3e-193 677.2 429 80.9
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.2e-192 676.8 429 80.7
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.6e-192 676.4 426 81.0
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 1.6e-192 676.4 429 80.2
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.6e-192 676.4 428 80.8
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 2.1e-192 676.0 426 80.5
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 2.1e-192 676.0 424 81.6
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 2.7e-192 675.6 426 80.5
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.5e-192 675.2 424 81.1
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 3.5e-192 675.2 428 80.6
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 3.5e-192 675.2 429 80.2
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 4.6e-192 674.9 429 80.2
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 4.6e-192 674.9 426 80.5
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 6.0e-192 674.5 424 80.7
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 6.0e-192 674.5 429 80.9
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 6.0e-192 674.5 426 81.0
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 7.9e-192 674.1 429 79.3
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 7.9e-192 674.1 424 81.1
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 7.9e-192 674.1 423 81.6
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.0e-191 673.7 441 78.5
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.0e-191 673.7 424 81.1
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 1.3e-191 673.3 444 77.7
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 2.3e-191 672.5 421 81.9
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.3e-191 672.5 426 80.3
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 2.3e-191 672.5 429 79.5
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 3.0e-191 672.2 437 78.9
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.9e-191 671.8 407 83.0
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 3.9e-191 671.8 424 80.9
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 8.7e-191 670.6 429 79.5
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.5e-190 669.8 428 79.4
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.6e-190 667.9 444 78.8
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.6e-189 666.4 429 79.5
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 8.1e-189 664.1 409 81.7
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.4e-188 663.3 429 77.9
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 1.8e-188 662.9 423 79.7
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.4e-188 662.5 401 82.8
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.4e-188 662.5 423 79.7
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 3.1e-188 662.1 423 79.2
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.3e-188 661.4 438 79.7
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 1.2e-187 660.2 423 79.0
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.0e-187 659.4 423 79.4
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.6e-187 659.1 423 79.2
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 2.6e-187 659.1 423 79.0
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 4.5e-187 658.3 428 78.7
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 4.5e-187 658.3 428 78.7
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 5.8e-187 657.9 423 79.2
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 5.8e-187 657.9 424 80.2
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.3e-186 656.8 386 85.2
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.7e-186 656.4 476 72.7
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.7e-186 656.4 476 72.7
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.7e-186 656.4 423 78.3
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 2.9e-186 655.6 423 79.2
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 2.9e-186 655.6 459 74.7
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.9e-186 654.8 388 84.3
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 6.4e-186 654.4 420 79.0
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 6.4e-186 654.4 453 75.9
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.1e-185 653.7 421 78.9
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 1.1e-185 653.7 423 78.5
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.1e-185 653.7 423 78.5
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 1.1e-185 653.7 423 78.5
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 2.4e-185 652.5 423 78.5
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 3.2e-185 652.1 423 78.7
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.1e-184 649.4 421 78.4
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.3e-183 646.7 433 76.4
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 3.7e-181 638.6 395 80.8
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 8.2e-181 637.5 385 83.1
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 6.9e-180 634.4 507 68.0
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 4.5e-179 631.7 429 76.2
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 9.3e-177 624.0 479 71.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.2e-176 623.6 363 85.4
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 3.5e-176 622.1 424 76.4
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 4.6e-176 621.7 422 75.1
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 6.0e-176 621.3 380 81.6
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.0e-176 621.3 430 77.2
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 1.0e-175 620.5 384 81.0
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 2.0e-171 606.3 376 81.1
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.9e-169 599.7 434 70.5
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.7e-166 587.4 412 75.2
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 1.8e-159 566.6 426 71.6
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.2e-155 553.9 313 89.5
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 3.6e-152 542.3 340 79.7
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 3.0e-151 539.3 417 65.7
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 4.8e-149 531.9 395 69.1
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 5.7e-142 508.4 394 66.0
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.0e-135 487.6 461 61.0
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 8.8e-135 484.6 276 89.9
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.3e-125 451.4 291 78.0
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 5.0e-122 442.2 260 85.0
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.9e-121 440.3 391 63.7
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.4e-116 423.3 238 90.3
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-97 361.3 244 73.8
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 6.2e-96 355.5 205 86.8
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 1.4e-95 354.4 242 70.2
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 7.6e-94 348.6 231 73.6
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 3.3e-73 280.0 293 54.3
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 6.2e-72 275.8 296 50.3
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 2.5e-68 263.8 207 65.7
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 1.4e-63 248.1 147 79.6
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 4.9e-61 239.6 189 63.0
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 7.4e-49 199.1 178 65.2
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 1.1e-44 185.3 114 88.6
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 7.2e-44 182.6 119 73.9
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 3.6e-43 180.3 140 65.0
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 4.1e-39 166.8 289 37.7
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 2.7e-35 154.1 157 59.9
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 8.0e-35 152.5 157 59.9
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 2.4e-31 141.0 153 53.6
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 6.5e-29 132.9 179 42.5
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 7.2e-28 129.4 115 60.0
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 3.5e-22 110.5 149 45.0
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.4e-18 98.6 69 66.7
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.5e-17 95.1 88 56.8
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 1.1e-12 79.0 53 81.1
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.2e-11 75.5 50 82.0
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 2.3e-10 71.2 40 92.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 2.2e-08 64.7 37 81.1
BcaNung05344 Brassica carinata HOM05D002061 ORTHO05D002849 2.7e-06 57.8 416 22.6
Sp2g03900 Schrenkiella parvula HOM05D002061 ORTHO05D002849 2.7e-06 57.8 413 23.0
C09p21320 Brassica napus HOM05D002061 ORTHO05D032307 3.5e-06 57.4 420 22.6
Hund22620 Selenicereus undatus HOM05D002061 ORTHO05D002849 3.5e-06 57.4 407 22.1
BcaC04g22273 Brassica carinata HOM05D002061 ORTHO05D032307 4.5e-06 57.0 420 22.6
A09p17220 Brassica napus HOM05D002061 ORTHO05D002849 4.5e-06 57.0 413 23.0
BraA09t37354Z Brassica rapa HOM05D002061 ORTHO05D002849 5.9e-06 56.6 377 23.6
Cfa022239 Carpinus fangiana HOM05D002061 ORTHO05D121718 5.9e-06 56.6 320 23.4
PSO017G0682 Papaver somniferum HOM05D002061 ORTHO05D002849 5.9e-06 56.6 373 23.3
A08p33810 Brassica napus HOM05D002061 ORTHO05D000754 7.8e-06 56.2 374 24.3
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 7.8e-06 56.2 106 37.7


User provided reference genes

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