Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 7.1e-130 467.2 231 100.0
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 3.0e-51 206.1 139 69.8
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 6.6e-51 204.9 153 62.7
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 4.3e-50 202.2 154 61.7
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 7.3e-50 201.4 154 63.6
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 7.3e-50 201.4 159 58.5
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.6e-49 200.3 139 65.5
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 2.1e-49 199.9 154 59.7
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 2.8e-49 199.5 139 66.9
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 3.6e-49 199.1 146 63.0
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 4.7e-49 198.7 143 64.3
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 6.2e-49 198.4 154 59.1
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 1.4e-48 197.2 154 60.4
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.4e-48 196.4 139 65.5
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 4.0e-48 195.7 154 63.0
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 4.0e-48 195.7 139 66.2
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 5.2e-48 195.3 154 59.1
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 8.9e-48 194.5 140 65.7
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.2e-47 194.1 154 59.7
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 1.5e-47 193.7 139 63.3
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 2.0e-47 193.4 140 65.7
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 2.0e-47 193.4 161 61.5
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 2.6e-47 193.0 149 61.1
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 2.6e-47 193.0 139 66.9
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 2.6e-47 193.0 154 58.4
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 3.4e-47 192.6 139 64.7
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 4.4e-47 192.2 139 67.6
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 5.8e-47 191.8 139 66.2
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 5.8e-47 191.8 139 66.2
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 7.6e-47 191.4 154 59.1
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 7.6e-47 191.4 146 60.3
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 7.6e-47 191.4 139 65.5
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 7.6e-47 191.4 153 60.1
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 1.7e-46 190.3 141 63.8
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 2.2e-46 189.9 141 63.1
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 8.4e-46 188.0 144 61.1
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 8.4e-46 188.0 139 64.7
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 8.4e-46 188.0 139 62.6
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 8.4e-46 188.0 139 64.7
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 1.1e-45 187.6 154 57.1
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 2.4e-45 186.4 140 65.0
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 2.4e-45 186.4 139 62.6
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 3.2e-45 186.0 139 64.0
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 5.4e-45 185.3 154 55.8
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 5.4e-45 185.3 140 63.6
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 9.2e-45 184.5 139 63.3
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 1.2e-44 184.1 154 57.8
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.6e-44 183.7 139 63.3
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.7e-44 183.0 134 64.9
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 2.7e-44 183.0 154 55.2
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 2.7e-44 183.0 154 55.2
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 3.5e-44 182.6 139 62.6
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 3.5e-44 182.6 139 62.6
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 3.5e-44 182.6 154 55.2
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 6.0e-44 181.8 154 55.8
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.0e-43 181.0 139 61.2
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.3e-43 180.6 139 61.9
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.3e-43 180.6 155 58.1
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 1.1e-42 177.6 133 63.2
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.1e-42 177.6 160 56.9
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 1.1e-42 177.6 139 61.2
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.5e-42 177.2 153 54.2
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 1.5e-42 177.2 147 59.9
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.9e-42 176.8 139 59.7
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.9e-42 176.8 139 60.4
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.9e-42 176.8 139 63.3
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 3.3e-42 176.0 139 59.0
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 4.3e-42 175.6 158 52.5
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 7.3e-42 174.9 139 61.2
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 9.6e-42 174.5 139 58.3
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 1.2e-41 174.1 123 69.1
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 1.2e-41 174.1 146 58.9
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 1.6e-41 173.7 139 59.0
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 1.6e-41 173.7 139 59.0
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.6e-41 172.6 139 58.3
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 3.6e-41 172.6 139 58.3
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 3.6e-41 172.6 139 58.3
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 3.6e-41 172.6 158 51.3
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 3.6e-41 172.6 139 58.3
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 4.7e-41 172.2 139 58.3
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 6.2e-41 171.8 139 62.6
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 6.2e-41 171.8 189 48.7
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 1.1e-40 171.0 158 52.5
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 1.4e-40 170.6 154 51.9
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.8e-40 170.2 139 58.3
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 2.4e-40 169.9 139 57.6
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 6.9e-40 168.3 139 56.8
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 6.9e-40 168.3 139 56.8
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 6.9e-40 168.3 139 56.8
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 6.9e-40 168.3 157 53.5
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 9.0e-40 167.9 140 57.9
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 9.0e-40 167.9 144 54.9
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.6e-39 166.4 139 56.8
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.6e-39 166.4 139 56.8
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 2.6e-39 166.4 139 60.4
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 4.4e-39 165.6 139 56.8
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 5.8e-39 165.2 139 56.1
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 7.6e-39 164.9 139 60.4
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 7.6e-39 164.9 143 54.5
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 9.9e-39 164.5 139 56.1
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 9.9e-39 164.5 139 60.4
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 2.2e-38 163.3 139 59.7
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 4.9e-38 162.2 139 55.4
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 6.4e-38 161.8 166 51.2
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 1.9e-37 160.2 139 59.0
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 3.5e-36 156.0 171 48.0
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 6.0e-36 155.2 135 57.0
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 6.0e-36 155.2 135 57.0
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 2.3e-35 153.3 148 55.4
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 5.1e-35 152.1 139 53.2
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.5e-34 149.8 134 57.5
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 4.3e-34 149.1 134 55.2
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 7.3e-34 148.3 139 53.2
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 9.0e-32 141.4 140 50.0
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 1.7e-30 137.1 84 76.2
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.7e-30 137.1 145 49.0
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 6.4e-30 135.2 148 48.6
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 6.4e-30 135.2 134 49.3
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.1e-29 134.4 156 45.5
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.9e-29 133.7 156 44.9
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 5.1e-27 125.6 91 62.6
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 7.6e-23 111.7 147 44.9
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.2e-22 110.2 126 45.2
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.5e-21 106.7 149 43.6
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 2.1e-20 103.6 63 71.4
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 5.1e-19 99.0 63 66.7
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 1.9e-13 80.5 56 58.9
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 3.5e-12 76.3 70 50.0
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 1.8e-11 73.9 48 66.7
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 5.3e-08 62.4 169 28.4


User provided reference genes

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