Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31102 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 5.4e-156 554.3 283 100.0
SEGI_21620 Sequoiadendron giganteum HOM05D002696 ORTHO05D009428 5.8e-33 145.6 91 84.6
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 1.6e-30 137.5 97 74.2
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 6.7e-21 105.5 98 51.0
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 2.2e-19 100.5 97 48.5
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 1.4e-18 97.8 97 46.4
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 1.8e-18 97.4 97 51.5
Solyc03g093250.2 Solanum lycopersicum HOM05D002696 ORTHO05D003940 3.1e-18 96.7 101 47.5
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 4.1e-18 96.3 97 46.4
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 5.3e-18 95.9 97 46.4
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 5.3e-18 95.9 97 48.5
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 9.0e-18 95.1 97 46.4
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 9.0e-18 95.1 97 46.4
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 2.6e-17 93.6 101 46.5
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 3.4e-17 93.2 97 46.4
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 3.4e-17 93.2 97 44.3
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 3.4e-17 93.2 97 46.4
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 3.4e-17 93.2 96 46.9
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 4.5e-17 92.8 97 44.3
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 5.9e-17 92.4 97 45.4
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 5.9e-17 92.4 259 26.6
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 5.9e-17 92.4 156 35.9
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 7.7e-17 92.0 96 44.8
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 1.0e-16 91.7 97 46.4
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.0e-16 91.7 243 26.7
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.0e-16 91.7 156 35.3
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 1.0e-16 91.7 243 26.7
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 1.0e-16 91.7 125 42.4
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.0e-16 91.7 97 45.4
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 1.0e-16 91.7 97 44.3
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 1.0e-16 91.7 97 48.5
MBI08_g38581_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 1.3e-16 91.3 96 46.9
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 1.3e-16 91.3 97 46.4
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 1.7e-16 90.9 97 42.3
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 1.7e-16 90.9 97 47.4
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 1.7e-16 90.9 118 39.8
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 1.7e-16 90.9 97 42.3
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 2.2e-16 90.5 101 41.6
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 2.2e-16 90.5 293 26.3
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 2.2e-16 90.5 97 47.4
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 2.9e-16 90.1 98 45.9
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 2.9e-16 90.1 97 43.3
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 5.0e-16 89.4 98 45.9
Lalb_Chr01g0008031 Lupinus albus HOM05D002696 ORTHO05D003940 5.0e-16 89.4 97 43.3
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 5.0e-16 89.4 97 42.3
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 5.0e-16 89.4 294 26.2
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 5.0e-16 89.4 242 27.3
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 6.5e-16 89.0 97 41.2
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 6.5e-16 89.0 95 46.3
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 6.5e-16 89.0 97 42.3
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 6.5e-16 89.0 97 42.3
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 8.5e-16 88.6 97 45.4
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 8.5e-16 88.6 97 42.3
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 8.5e-16 88.6 100 42.0
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 8.5e-16 88.6 97 44.3
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 1.1e-15 88.2 235 26.8
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 1.1e-15 88.2 97 40.2
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.4e-15 87.8 156 34.6
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 1.4e-15 87.8 97 44.3
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 1.9e-15 87.4 97 41.2
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 1.9e-15 87.4 275 26.5
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 1.9e-15 87.4 97 43.3
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 1.9e-15 87.4 97 43.3
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.5e-15 87.0 97 42.3
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 2.5e-15 87.0 97 44.3
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 4.2e-15 86.3 97 43.3
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 4.2e-15 86.3 97 45.4
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 4.2e-15 86.3 97 42.3
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 4.2e-15 86.3 97 43.3
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 4.2e-15 86.3 97 43.3
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 5.5e-15 85.9 97 42.3
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 7.2e-15 85.5 111 38.7
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 9.4e-15 85.1 97 39.2
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 9.4e-15 85.1 97 45.4
SEGI_08001 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 9.4e-15 85.1 66 68.2
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 1.2e-14 84.7 97 43.3
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 1.6e-14 84.3 89 44.9
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 1.6e-14 84.3 97 42.3
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 2.1e-14 84.0 89 44.9
FvH4_7g28371 Fragaria vesca HOM05D002696 ORTHO05D003940 2.1e-14 84.0 97 41.2
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.1e-14 84.0 97 41.2
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.1e-14 84.0 97 41.2
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.1e-14 84.0 97 41.2
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 2.7e-14 83.6 101 39.6
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 2.7e-14 83.6 97 39.2
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 2.7e-14 83.6 272 25.7
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 3.6e-14 83.2 97 38.1
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 3.6e-14 83.2 97 41.2
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.6e-14 82.8 97 41.2
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.6e-14 82.8 97 41.2
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 6.1e-14 82.4 95 40.0
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 7.9e-14 82.0 97 41.2
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 1.0e-13 81.6 98 38.8
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 1.0e-13 81.6 98 40.8
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 1.0e-13 81.6 272 25.4
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 1.4e-13 81.3 118 38.1
SHI28001 Sapria himalayana HOM05D002696 ORTHO05D000023 1.4e-13 81.3 97 39.2
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 1.4e-13 81.3 97 38.1
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 1.8e-13 80.9 97 41.2
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 1.8e-13 80.9 97 39.2
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 2.3e-13 80.5 97 38.1
FAN06G4966 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.3e-13 80.5 97 40.2
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 3.0e-13 80.1 100 40.0
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 3.0e-13 80.1 104 39.4
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 3.9e-13 79.7 97 39.2
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 3.9e-13 79.7 85 45.9
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 3.9e-13 79.7 97 41.2
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 5.1e-13 79.3 97 38.1
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 5.1e-13 79.3 97 39.2
MBI08_g12687_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 5.1e-13 79.3 96 44.8
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 8.8e-13 78.6 100 42.0
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 1.1e-12 78.2 115 38.3
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.1e-12 78.2 101 35.6
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.1e-12 78.2 98 36.7
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 1.1e-12 78.2 93 44.1
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 1.5e-12 77.8 304 24.3
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 1.5e-12 77.8 97 39.2
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.5e-12 77.8 97 39.2
HPP92_013637 Vanilla planifolia HOM05D002696 ORTHO05D003940 2.0e-12 77.4 100 42.0
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 2.5e-12 77.0 97 37.1
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.3e-12 76.3 97 38.1
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 5.7e-12 75.9 86 44.2
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 5.7e-12 75.9 86 44.2
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 7.4e-12 75.5 105 37.1
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 9.7e-12 75.1 101 35.6
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 1.7e-11 74.3 97 36.1
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 1.7e-11 74.3 97 36.1
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.7e-11 74.3 81 43.2
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 2.8e-11 73.6 97 33.0
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 4.8e-11 72.8 97 39.2
QL09p005491 Quercus lobata HOM05D002696 ORTHO05D003940 4.8e-11 72.8 72 48.6
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 6.3e-11 72.4 97 39.2
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 1.1e-10 71.6 97 37.1
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 2.4e-10 70.5 80 42.5
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 2.4e-10 70.5 80 42.5
Dinv06563 Davidia involucrata HOM05D002696 ORTHO05D003940 1.2e-09 68.2 70 42.9
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 2.0e-09 67.4 97 35.1
FAN06G0316 Fragaria x ananassa HOM05D002696 ORTHO05D003940 7.7e-09 65.5 73 43.8
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 6.5e-08 62.4 97 35.1
CBR_g40806 Chara braunii HOM05D002696 ORTHO05D003940 6.5e-08 62.4 89 33.7
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 5.5e-07 59.3 46 50.0
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 7.2e-07 58.9 45 51.1
SEGI_38832 Sequoiadendron giganteum HOM05D000079 ORTHO05D000508 7.2e-07 58.9 77 46.8
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 9.4e-07 58.5 48 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 2.7e-06 57.0 97 30.9
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 6.1e-06 55.8 96 29.2
FvH4_7g27351 Fragaria vesca HOM05D002696 ORTHO05D003940 7.9e-06 55.5 43 53.5


User provided reference genes

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