Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 4.7e-127 458.0 249 100.0
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.1e-112 410.2 225 100.0
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 4.1e-38 162.5 128 60.9
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 5.3e-38 162.2 127 59.8
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 1.5e-37 160.6 129 59.7
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 2.6e-37 159.8 126 58.7
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 3.4e-37 159.5 115 62.6
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.0e-36 157.9 119 60.5
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.0e-36 157.9 126 59.5
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 1.3e-36 157.5 116 62.9
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 1.7e-36 157.1 123 59.3
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 2.2e-36 156.8 119 61.3
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 5.0e-36 155.6 125 56.8
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 6.5e-36 155.2 129 59.7
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 8.5e-36 154.8 116 61.2
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 1.1e-35 154.5 127 58.3
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.4e-35 154.1 115 62.6
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 1.9e-35 153.7 116 61.2
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.9e-35 153.7 115 60.9
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 2.5e-35 153.3 129 58.1
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 3.2e-35 152.9 128 56.2
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 4.2e-35 152.5 113 63.7
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 7.2e-35 151.8 115 61.7
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 7.2e-35 151.8 119 61.3
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 7.2e-35 151.8 119 60.5
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 9.4e-35 151.4 127 59.1
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 1.2e-34 151.0 127 58.3
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 1.2e-34 151.0 125 58.4
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.6e-34 150.6 125 55.2
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 1.6e-34 150.6 126 57.1
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 1.6e-34 150.6 126 57.1
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 2.1e-34 150.2 114 58.8
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 2.1e-34 150.2 125 57.6
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 2.7e-34 149.8 119 56.3
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 2.7e-34 149.8 113 60.2
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 2.7e-34 149.8 119 59.7
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 2.7e-34 149.8 125 57.6
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 3.6e-34 149.4 125 57.6
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 3.6e-34 149.4 126 57.1
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 4.6e-34 149.1 126 57.9
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 4.6e-34 149.1 114 63.2
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 4.6e-34 149.1 119 59.7
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 6.1e-34 148.7 114 59.6
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 7.9e-34 148.3 122 56.6
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 1.0e-33 147.9 119 59.7
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 1.0e-33 147.9 125 56.0
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 1.4e-33 147.5 126 56.3
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 1.4e-33 147.5 112 59.8
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.4e-33 147.5 126 57.1
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 2.3e-33 146.7 118 58.5
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 2.3e-33 146.7 111 61.3
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 3.0e-33 146.4 130 55.4
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 3.0e-33 146.4 119 56.3
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 3.0e-33 146.4 119 58.0
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 3.9e-33 146.0 105 63.8
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 5.1e-33 145.6 127 55.1
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 6.7e-33 145.2 117 59.0
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 6.7e-33 145.2 122 56.6
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 6.7e-33 145.2 126 55.6
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 8.8e-33 144.8 112 59.8
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 8.8e-33 144.8 112 59.8
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 8.8e-33 144.8 112 59.8
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 8.8e-33 144.8 112 59.8
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 8.8e-33 144.8 112 59.8
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 8.8e-33 144.8 122 55.7
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 8.8e-33 144.8 111 62.2
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 1.1e-32 144.4 116 56.9
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 2.5e-32 143.3 125 52.8
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 3.3e-32 142.9 113 54.9
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 3.3e-32 142.9 125 56.8
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 4.3e-32 142.5 126 54.0
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 5.7e-32 142.1 126 58.7
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 5.7e-32 142.1 80 87.5
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 9.7e-32 141.4 140 49.3
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 1.7e-31 140.6 133 54.1
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 2.2e-31 140.2 125 52.8
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 2.2e-31 140.2 124 54.8
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 2.2e-31 140.2 127 50.4
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 2.8e-31 139.8 144 50.7
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 3.7e-31 139.4 122 55.7
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.3e-31 138.7 113 59.3
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 1.1e-30 137.9 122 53.3
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.1e-30 137.9 122 57.4
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.1e-30 137.9 126 54.8
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.8e-30 137.1 110 56.4
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.2e-29 134.4 126 53.2
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.2e-29 134.4 126 53.2
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.2e-29 134.4 126 53.2
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 2.6e-29 133.3 126 50.8
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 4.5e-29 132.5 126 52.4
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.9e-29 132.1 127 53.5
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 1.3e-28 131.0 121 54.5
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.3e-28 131.0 126 52.4
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 2.9e-28 129.8 123 51.2
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 1.4e-27 127.5 126 50.0
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 1.9e-27 127.1 126 47.6
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.5e-27 126.7 111 53.2
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 5.5e-27 125.6 86 67.4
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 7.2e-27 125.2 94 64.9
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 6.1e-26 122.1 111 54.1
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 6.1e-26 122.1 111 54.1
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 7.9e-26 121.7 166 41.6
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 7.9e-26 121.7 118 51.7
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 7.9e-26 121.7 134 51.5
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 1.0e-25 121.3 113 48.7
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 3.0e-25 119.8 94 58.5
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 2.6e-24 116.7 126 53.2
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 9.7e-24 114.8 124 46.8
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 6.3e-23 112.1 126 42.1
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 6.3e-23 112.1 126 42.1
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 8.2e-23 111.7 124 43.5
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 8.2e-23 111.7 90 61.1
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 1.2e-21 107.8 128 41.4
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.2e-20 103.6 128 48.4
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.5e-19 100.1 113 43.4
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 3.9e-17 92.8 114 44.7
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 9.1e-14 81.6 59 61.0
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 9.1e-14 81.6 81 44.4
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 2.0e-13 80.5 64 59.4
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 4.5e-13 79.3 80 48.8
SEGI_35466 Sequoiadendron giganteum HOM05D000131 ORTHO05D000086 1.3e-12 77.8 77 67.5
SEGI_20992 Sequoiadendron giganteum HOM05D000002 ORTHO05D006286 1.7e-12 77.4 120 42.5
SEGI_25297 Sequoiadendron giganteum HOM05D001503 ORTHO05D001722 6.7e-09 65.5 54 66.7
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 8.8e-09 65.1 58 46.6
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 5.7e-08 62.4 55 69.1
Actinidia16426 Actinidia chinensis HOM05D002283 ORTHO05D008228 2.2e-07 60.5 75 50.7
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 2.2e-07 60.5 61 47.5
SHI49193 Sapria himalayana HOM05D000002 ORTHO05D000001 8.2e-07 58.5 127 39.4
SHI11872 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-06 58.2 71 52.1
SHI23957 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-06 57.8 71 52.1
SEGI_40189 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.4e-06 57.0 106 37.7
SHI01873 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 50.7
SHI12432 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 50.7
SHI13922 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 50.7
SHI17839 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 50.7
SHI25715 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 50.7
SHI31976 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 50.7
SHI51062 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 50.7
SHI51704 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 50.7
SHI54722 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 49.3
SHI54806 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 49.3
SHI54931 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 71 49.3
SHI05510 Sapria himalayana HOM05D000002 ORTHO05D000001 9.1e-06 55.1 71 49.3


User provided reference genes

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