Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 3.4e-152 541.6 264 100.0
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 1.0e-31 141.4 108 65.7
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 1.0e-31 141.4 94 69.1
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 3.9e-31 139.4 94 69.1
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 8.7e-31 138.3 94 69.1
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 1.1e-30 137.9 94 67.0
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 1.1e-30 137.9 94 67.0
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 1.9e-30 137.1 94 68.1
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 2.5e-30 136.7 94 68.1
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 3.3e-30 136.3 94 67.0
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 4.3e-30 136.0 94 69.1
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 9.6e-30 134.8 94 68.1
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 9.6e-30 134.8 94 66.0
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 1.3e-29 134.4 94 66.0
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 1.3e-29 134.4 95 68.4
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 1.3e-29 134.4 94 67.0
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 1.3e-29 134.4 94 66.0
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 1.6e-29 134.0 94 64.9
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 2.1e-29 133.7 94 67.0
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.1e-29 133.7 93 67.7
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 2.1e-29 133.7 94 67.0
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 3.6e-29 132.9 94 66.0
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 3.6e-29 132.9 94 66.0
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 3.6e-29 132.9 107 60.7
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 3.6e-29 132.9 115 56.5
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 4.8e-29 132.5 93 65.6
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 6.2e-29 132.1 94 66.0
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 6.2e-29 132.1 94 66.0
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 6.2e-29 132.1 94 66.0
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 6.2e-29 132.1 93 68.8
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 6.2e-29 132.1 94 64.9
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 6.2e-29 132.1 94 64.9
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 6.2e-29 132.1 94 64.9
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 6.2e-29 132.1 94 64.9
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 8.1e-29 131.7 94 64.9
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 8.1e-29 131.7 94 64.9
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 8.1e-29 131.7 94 67.0
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 1.4e-28 131.0 94 62.8
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 1.4e-28 131.0 94 64.9
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 1.8e-28 130.6 94 63.8
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 1.8e-28 130.6 94 64.9
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 1.8e-28 130.6 118 55.1
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 1.8e-28 130.6 94 66.0
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 1.8e-28 130.6 100 61.0
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 1.8e-28 130.6 94 63.8
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 2.4e-28 130.2 94 63.8
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 2.4e-28 130.2 94 64.9
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 3.1e-28 129.8 93 62.4
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 3.1e-28 129.8 94 63.8
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 3.1e-28 129.8 95 64.2
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 3.1e-28 129.8 94 64.9
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 4.0e-28 129.4 94 63.8
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 4.0e-28 129.4 93 61.3
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 4.0e-28 129.4 94 64.9
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 5.3e-28 129.0 94 61.7
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 5.3e-28 129.0 94 61.7
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 5.3e-28 129.0 94 63.8
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 5.3e-28 129.0 94 63.8
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 5.3e-28 129.0 93 61.3
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 5.3e-28 129.0 94 62.8
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 5.3e-28 129.0 106 58.5
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 5.3e-28 129.0 109 56.0
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 6.9e-28 128.6 94 62.8
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 9.0e-28 128.3 94 60.6
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 9.0e-28 128.3 94 61.7
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 9.0e-28 128.3 94 62.8
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 1.2e-27 127.9 94 63.8
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 1.2e-27 127.9 93 61.3
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 1.5e-27 127.5 133 49.6
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 1.5e-27 127.5 94 60.6
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 1.5e-27 127.5 94 60.6
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 1.5e-27 127.5 94 63.8
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 2.0e-27 127.1 94 62.8
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.0e-27 127.1 96 63.5
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.0e-27 127.1 96 63.5
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 2.0e-27 127.1 96 63.5
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 2.0e-27 127.1 115 54.8
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 2.6e-27 126.7 94 62.8
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 2.6e-27 126.7 94 62.8
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 3.4e-27 126.3 94 63.8
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 3.4e-27 126.3 94 61.7
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 5.8e-27 125.6 94 60.6
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 5.8e-27 125.6 96 63.5
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 5.8e-27 125.6 96 63.5
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 9.9e-27 124.8 94 59.6
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 9.9e-27 124.8 94 59.6
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 9.9e-27 124.8 94 59.6
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 9.9e-27 124.8 94 59.6
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 9.9e-27 124.8 94 59.6
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 9.9e-27 124.8 94 59.6
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 1.3e-26 124.4 94 60.6
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 1.7e-26 124.0 94 60.6
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.2e-26 123.6 96 62.5
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 2.9e-26 123.2 94 62.8
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 2.9e-26 123.2 94 58.5
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.8e-26 122.9 94 60.6
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 3.8e-26 122.9 94 59.6
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 3.8e-26 122.9 94 58.5
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 4.9e-26 122.5 94 58.5
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 4.9e-26 122.5 94 60.6
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 6.4e-26 122.1 94 60.6
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 1.1e-25 121.3 120 54.2
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 1.4e-25 120.9 94 58.5
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 1.4e-25 120.9 94 59.6
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 2.4e-25 120.2 94 61.7
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 2.4e-25 120.2 92 60.9
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 3.2e-25 119.8 96 59.4
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 3.2e-25 119.8 94 58.5
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 5.5e-25 119.0 94 58.5
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 5.5e-25 119.0 100 55.0
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-24 117.9 94 58.5
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 1.2e-24 117.9 94 58.5
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 1.6e-24 117.5 94 58.5
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 2.7e-24 116.7 94 59.6
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 3.5e-24 116.3 96 59.4
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 4.6e-24 115.9 94 57.4
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 4.6e-24 115.9 96 59.4
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 6.0e-24 115.5 94 58.5
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 6.0e-24 115.5 121 49.6
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 1.0e-23 114.8 94 57.4
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 1.0e-23 114.8 94 57.4
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 1.3e-23 114.4 94 57.4
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 1.3e-23 114.4 94 57.4
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 1.3e-23 114.4 94 57.4
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 3.9e-23 112.8 80 65.0
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 5.1e-23 112.5 80 66.2
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 8.7e-23 111.7 93 55.9
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 7.4e-22 108.6 79 64.6
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 1.3e-21 107.8 82 63.4
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.6e-21 107.5 94 56.4
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 2.1e-21 107.1 80 63.8
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 6.2e-21 105.5 115 49.6
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 1.1e-20 104.8 83 59.0
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 1.4e-20 104.4 79 62.0
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 5.3e-20 102.4 70 70.0
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.2e-19 101.3 94 53.2
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.2e-19 101.3 115 48.7
DCAR_028625 Daucus carota HOM05D003906 ORTHO05D004776 5.5e-17 92.4 75 57.3
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-16 89.0 92 47.8
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 7.9e-16 88.6 97 43.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.3e-15 87.0 100 45.0
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 1.1e-14 84.7 98 45.9
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 5.7e-14 82.4 175 35.4
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 1.6e-13 80.9 92 46.7
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 2.1e-13 80.5 94 46.8
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 2.4e-12 77.0 115 36.5
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 5.3e-12 75.9 147 36.7
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 1.2e-11 74.7 103 39.8
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-11 74.7 92 43.5
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-11 74.7 92 43.5
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-11 74.7 92 43.5
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 3.4e-11 73.2 88 42.0
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 3.4e-11 73.2 91 44.0
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 1.1e-09 68.2 78 42.3
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.9e-09 67.4 105 37.1
SEGI_09658 Sequoiadendron giganteum HOM05D001514 ORTHO05D000001 1.9e-09 67.4 72 44.4
SEGI_22217 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 3.2e-09 66.6 72 44.4
SEGI_05802 Sequoiadendron giganteum HOM05D000002 ORTHO05D007167 5.5e-09 65.9 58 50.0
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.6e-08 64.3 83 38.6
SEGI_20354 Sequoiadendron giganteum HOM05D000212 ORTHO05D000001 1.3e-07 61.2 58 48.3
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.8e-07 60.8 49 49.0
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.9e-06 57.4 47 57.4


User provided reference genes

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